Layer-selective deep representation to improve esophageal cancer classification

Bibliographic Details
Main Author: Souza, Luis A.
Publication Date: 2024
Other Authors: Passos, Leandro A., Santana, Marcos Cleison S. [UNESP], Mendel, Robert, Rauber, David, Ebigbo, Alanna, Probst, Andreas, Messmann, Helmut, Papa, João Paulo [UNESP], Palm, Christoph
Format: Article
Language: eng
Source: Repositório Institucional da UNESP
Download full: http://dx.doi.org/10.1007/s11517-024-03142-8
https://hdl.handle.net/11449/309738
Summary: Abstract: Even though artificial intelligence and machine learning have demonstrated remarkable performances in medical image computing, their accountability and transparency level must be improved to transfer this success into clinical practice. The reliability of machine learning decisions must be explained and interpreted, especially for supporting the medical diagnosis. For this task, the deep learning techniques’ black-box nature must somehow be lightened up to clarify its promising results. Hence, we aim to investigate the impact of the ResNet-50 deep convolutional design for Barrett’s esophagus and adenocarcinoma classification. For such a task, and aiming at proposing a two-step learning technique, the output of each convolutional layer that composes the ResNet-50 architecture was trained and classified for further definition of layers that would provide more impact in the architecture. We showed that local information and high-dimensional features are essential to improve the classification for our task. Besides, we observed a significant improvement when the most discriminative layers expressed more impact in the training and classification of ResNet-50 for Barrett’s esophagus and adenocarcinoma classification, demonstrating that both human knowledge and computational processing may influence the correct learning of such a problem. Graphical abstract: (Figure presented.)
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spelling Layer-selective deep representation to improve esophageal cancer classificationBarrett’s esophagus detectionConvolutional neural networksDeep learningMultistep trainingAbstract: Even though artificial intelligence and machine learning have demonstrated remarkable performances in medical image computing, their accountability and transparency level must be improved to transfer this success into clinical practice. The reliability of machine learning decisions must be explained and interpreted, especially for supporting the medical diagnosis. For this task, the deep learning techniques’ black-box nature must somehow be lightened up to clarify its promising results. Hence, we aim to investigate the impact of the ResNet-50 deep convolutional design for Barrett’s esophagus and adenocarcinoma classification. For such a task, and aiming at proposing a two-step learning technique, the output of each convolutional layer that composes the ResNet-50 architecture was trained and classified for further definition of layers that would provide more impact in the architecture. We showed that local information and high-dimensional features are essential to improve the classification for our task. Besides, we observed a significant improvement when the most discriminative layers expressed more impact in the training and classification of ResNet-50 for Barrett’s esophagus and adenocarcinoma classification, demonstrating that both human knowledge and computational processing may influence the correct learning of such a problem. Graphical abstract: (Figure presented.)Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)Alexander von Humboldt-StiftungEngineering and Physical Sciences Research CouncilDepartment of Informatics Espírito Santo Federal UniversityCMI Lab School of Engineering and Informatics University of WolverhamptonDepartment of Computing São Paulo State UniversityRegensburg Medical Image Computing (ReMIC) Ostbayerische Technische Hochschule Regensburg (OTH Regensburg)Department of Gastroenterology University Hospital AugsburgDepartment of Computing São Paulo State UniversityFAPESP: 2013/07375-0FAPESP: 2014/12236- 1FAPESP: 2016/19403-6FAPESP: 2017/04847-9FAPESP: 2019/08605-5CNPq: 306166/2014-3CNPq: 307066/2017-7Alexander von Humboldt-Stiftung: BEX 0581-16-0Engineering and Physical Sciences Research Council: EP/T021063/1Espírito Santo Federal UniversityUniversity of WolverhamptonUniversidade Estadual Paulista (UNESP)Ostbayerische Technische Hochschule Regensburg (OTH Regensburg)University Hospital AugsburgSouza, Luis A.Passos, Leandro A.Santana, Marcos Cleison S. [UNESP]Mendel, RobertRauber, DavidEbigbo, AlannaProbst, AndreasMessmann, HelmutPapa, João Paulo [UNESP]Palm, Christoph2025-04-29T20:16:28Z2024-11-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article3355-3372http://dx.doi.org/10.1007/s11517-024-03142-8Medical and Biological Engineering and Computing, v. 62, n. 11, p. 3355-3372, 2024.1741-04440140-0118https://hdl.handle.net/11449/30973810.1007/s11517-024-03142-82-s2.0-85195390128Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengMedical and Biological Engineering and Computinginfo:eu-repo/semantics/openAccess2025-04-30T13:33:29Zoai:repositorio.unesp.br:11449/309738Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestrepositoriounesp@unesp.bropendoar:29462025-04-30T13:33:29Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Layer-selective deep representation to improve esophageal cancer classification
title Layer-selective deep representation to improve esophageal cancer classification
spellingShingle Layer-selective deep representation to improve esophageal cancer classification
Souza, Luis A.
Barrett’s esophagus detection
Convolutional neural networks
Deep learning
Multistep training
title_short Layer-selective deep representation to improve esophageal cancer classification
title_full Layer-selective deep representation to improve esophageal cancer classification
title_fullStr Layer-selective deep representation to improve esophageal cancer classification
title_full_unstemmed Layer-selective deep representation to improve esophageal cancer classification
title_sort Layer-selective deep representation to improve esophageal cancer classification
author Souza, Luis A.
author_facet Souza, Luis A.
Passos, Leandro A.
Santana, Marcos Cleison S. [UNESP]
Mendel, Robert
Rauber, David
Ebigbo, Alanna
Probst, Andreas
Messmann, Helmut
Papa, João Paulo [UNESP]
Palm, Christoph
author_role author
author2 Passos, Leandro A.
Santana, Marcos Cleison S. [UNESP]
Mendel, Robert
Rauber, David
Ebigbo, Alanna
Probst, Andreas
Messmann, Helmut
Papa, João Paulo [UNESP]
Palm, Christoph
author2_role author
author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv Espírito Santo Federal University
University of Wolverhampton
Universidade Estadual Paulista (UNESP)
Ostbayerische Technische Hochschule Regensburg (OTH Regensburg)
University Hospital Augsburg
dc.contributor.author.fl_str_mv Souza, Luis A.
Passos, Leandro A.
Santana, Marcos Cleison S. [UNESP]
Mendel, Robert
Rauber, David
Ebigbo, Alanna
Probst, Andreas
Messmann, Helmut
Papa, João Paulo [UNESP]
Palm, Christoph
dc.subject.por.fl_str_mv Barrett’s esophagus detection
Convolutional neural networks
Deep learning
Multistep training
topic Barrett’s esophagus detection
Convolutional neural networks
Deep learning
Multistep training
description Abstract: Even though artificial intelligence and machine learning have demonstrated remarkable performances in medical image computing, their accountability and transparency level must be improved to transfer this success into clinical practice. The reliability of machine learning decisions must be explained and interpreted, especially for supporting the medical diagnosis. For this task, the deep learning techniques’ black-box nature must somehow be lightened up to clarify its promising results. Hence, we aim to investigate the impact of the ResNet-50 deep convolutional design for Barrett’s esophagus and adenocarcinoma classification. For such a task, and aiming at proposing a two-step learning technique, the output of each convolutional layer that composes the ResNet-50 architecture was trained and classified for further definition of layers that would provide more impact in the architecture. We showed that local information and high-dimensional features are essential to improve the classification for our task. Besides, we observed a significant improvement when the most discriminative layers expressed more impact in the training and classification of ResNet-50 for Barrett’s esophagus and adenocarcinoma classification, demonstrating that both human knowledge and computational processing may influence the correct learning of such a problem. Graphical abstract: (Figure presented.)
publishDate 2024
dc.date.none.fl_str_mv 2024-11-01
2025-04-29T20:16:28Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.1007/s11517-024-03142-8
Medical and Biological Engineering and Computing, v. 62, n. 11, p. 3355-3372, 2024.
1741-0444
0140-0118
https://hdl.handle.net/11449/309738
10.1007/s11517-024-03142-8
2-s2.0-85195390128
url http://dx.doi.org/10.1007/s11517-024-03142-8
https://hdl.handle.net/11449/309738
identifier_str_mv Medical and Biological Engineering and Computing, v. 62, n. 11, p. 3355-3372, 2024.
1741-0444
0140-0118
10.1007/s11517-024-03142-8
2-s2.0-85195390128
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Medical and Biological Engineering and Computing
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv 3355-3372
dc.source.none.fl_str_mv Scopus
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
repository.mail.fl_str_mv repositoriounesp@unesp.br
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