DeepCraftFuse: visual and deeply-learnable features work better together for esophageal cancer detection in patients with Barrett’s esophagus

Bibliographic Details
Main Author: Souza Jr, Luis A.
Publication Date: 2024
Other Authors: Pacheco, André G. C., Passos, Leandro A. [UNESP], Santana, Marcos C. S. [UNESP], Mendel, Robert, Ebigbo, Alanna, Probst, Andreas, Messmann, Helmut, Palm, Christoph, Papa, João Paulo [UNESP]
Format: Article
Language: eng
Source: Repositório Institucional da UNESP
Download full: http://dx.doi.org/10.1007/s00521-024-09615-z
https://hdl.handle.net/11449/308009
Summary: Limitations in computer-assisted diagnosis include lack of labeled data and inability to model the relation between what experts see and what computers learn. Even though artificial intelligence and machine learning have demonstrated remarkable performances in medical image computing, their accountability and transparency level must be improved to transfer this success into clinical practice. The reliability of machine learning decisions must be explained and interpreted, especially for supporting the medical diagnosis. While deep learning techniques are broad so that unseen information might help learn patterns of interest, human insights to describe objects of interest help in decision-making. This paper proposes a novel approach, DeepCraftFuse, to address the challenge of combining information provided by deep networks with visual-based features to significantly enhance the correct identification of cancerous tissues in patients affected with Barrett’s esophagus (BE). We demonstrate that DeepCraftFuse outperforms state-of-the-art techniques on private and public datasets, reaching results of around 95% when distinguishing patients affected by BE that is either positive or negative to esophageal cancer.
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spelling DeepCraftFuse: visual and deeply-learnable features work better together for esophageal cancer detection in patients with Barrett’s esophagusAdenocarcinomaBarrett’s esophagusDeep learningMachine learningObject detectorLimitations in computer-assisted diagnosis include lack of labeled data and inability to model the relation between what experts see and what computers learn. Even though artificial intelligence and machine learning have demonstrated remarkable performances in medical image computing, their accountability and transparency level must be improved to transfer this success into clinical practice. The reliability of machine learning decisions must be explained and interpreted, especially for supporting the medical diagnosis. While deep learning techniques are broad so that unseen information might help learn patterns of interest, human insights to describe objects of interest help in decision-making. This paper proposes a novel approach, DeepCraftFuse, to address the challenge of combining information provided by deep networks with visual-based features to significantly enhance the correct identification of cancerous tissues in patients affected with Barrett’s esophagus (BE). We demonstrate that DeepCraftFuse outperforms state-of-the-art techniques on private and public datasets, reaching results of around 95% when distinguishing patients affected by BE that is either positive or negative to esophageal cancer.Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)Alexander von Humboldt-StiftungDepartment of Informatics Federal University of Espírito SantoRegensburg Medical Image Computing (ReMIC) Ostbayerische Technische Hochschule Regensburg (OTH Regensburg)Department of Computing São Paulo State UniversityDepartment of Gastroenterology University Hospital AugsburgDepartment of Computing São Paulo State UniversityFAPESP: 2013/07375-0FAPESP: 2014/12236-1FAPESP: 2016/19403-6FAPESP: 2017/04847-9FAPESP: 2019/08605-5CNPq: 306166/2014-3CNPq: 307066/2017-7Alexander von Humboldt-Stiftung: BEX 0581-16-0Federal University of Espírito SantoOstbayerische Technische Hochschule Regensburg (OTH Regensburg)Universidade Estadual Paulista (UNESP)University Hospital AugsburgSouza Jr, Luis A.Pacheco, André G. C.Passos, Leandro A. [UNESP]Santana, Marcos C. S. [UNESP]Mendel, RobertEbigbo, AlannaProbst, AndreasMessmann, HelmutPalm, ChristophPapa, João Paulo [UNESP]2025-04-29T20:11:00Z2024-06-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article10445-10459http://dx.doi.org/10.1007/s00521-024-09615-zNeural Computing and Applications, v. 36, n. 18, p. 10445-10459, 2024.1433-30580941-0643https://hdl.handle.net/11449/30800910.1007/s00521-024-09615-z2-s2.0-85187645947Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengNeural Computing and Applicationsinfo:eu-repo/semantics/openAccess2025-04-30T14:36:06Zoai:repositorio.unesp.br:11449/308009Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestrepositoriounesp@unesp.bropendoar:29462025-04-30T14:36:06Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv DeepCraftFuse: visual and deeply-learnable features work better together for esophageal cancer detection in patients with Barrett’s esophagus
title DeepCraftFuse: visual and deeply-learnable features work better together for esophageal cancer detection in patients with Barrett’s esophagus
spellingShingle DeepCraftFuse: visual and deeply-learnable features work better together for esophageal cancer detection in patients with Barrett’s esophagus
Souza Jr, Luis A.
Adenocarcinoma
Barrett’s esophagus
Deep learning
Machine learning
Object detector
title_short DeepCraftFuse: visual and deeply-learnable features work better together for esophageal cancer detection in patients with Barrett’s esophagus
title_full DeepCraftFuse: visual and deeply-learnable features work better together for esophageal cancer detection in patients with Barrett’s esophagus
title_fullStr DeepCraftFuse: visual and deeply-learnable features work better together for esophageal cancer detection in patients with Barrett’s esophagus
title_full_unstemmed DeepCraftFuse: visual and deeply-learnable features work better together for esophageal cancer detection in patients with Barrett’s esophagus
title_sort DeepCraftFuse: visual and deeply-learnable features work better together for esophageal cancer detection in patients with Barrett’s esophagus
author Souza Jr, Luis A.
author_facet Souza Jr, Luis A.
Pacheco, André G. C.
Passos, Leandro A. [UNESP]
Santana, Marcos C. S. [UNESP]
Mendel, Robert
Ebigbo, Alanna
Probst, Andreas
Messmann, Helmut
Palm, Christoph
Papa, João Paulo [UNESP]
author_role author
author2 Pacheco, André G. C.
Passos, Leandro A. [UNESP]
Santana, Marcos C. S. [UNESP]
Mendel, Robert
Ebigbo, Alanna
Probst, Andreas
Messmann, Helmut
Palm, Christoph
Papa, João Paulo [UNESP]
author2_role author
author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv Federal University of Espírito Santo
Ostbayerische Technische Hochschule Regensburg (OTH Regensburg)
Universidade Estadual Paulista (UNESP)
University Hospital Augsburg
dc.contributor.author.fl_str_mv Souza Jr, Luis A.
Pacheco, André G. C.
Passos, Leandro A. [UNESP]
Santana, Marcos C. S. [UNESP]
Mendel, Robert
Ebigbo, Alanna
Probst, Andreas
Messmann, Helmut
Palm, Christoph
Papa, João Paulo [UNESP]
dc.subject.por.fl_str_mv Adenocarcinoma
Barrett’s esophagus
Deep learning
Machine learning
Object detector
topic Adenocarcinoma
Barrett’s esophagus
Deep learning
Machine learning
Object detector
description Limitations in computer-assisted diagnosis include lack of labeled data and inability to model the relation between what experts see and what computers learn. Even though artificial intelligence and machine learning have demonstrated remarkable performances in medical image computing, their accountability and transparency level must be improved to transfer this success into clinical practice. The reliability of machine learning decisions must be explained and interpreted, especially for supporting the medical diagnosis. While deep learning techniques are broad so that unseen information might help learn patterns of interest, human insights to describe objects of interest help in decision-making. This paper proposes a novel approach, DeepCraftFuse, to address the challenge of combining information provided by deep networks with visual-based features to significantly enhance the correct identification of cancerous tissues in patients affected with Barrett’s esophagus (BE). We demonstrate that DeepCraftFuse outperforms state-of-the-art techniques on private and public datasets, reaching results of around 95% when distinguishing patients affected by BE that is either positive or negative to esophageal cancer.
publishDate 2024
dc.date.none.fl_str_mv 2024-06-01
2025-04-29T20:11:00Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.1007/s00521-024-09615-z
Neural Computing and Applications, v. 36, n. 18, p. 10445-10459, 2024.
1433-3058
0941-0643
https://hdl.handle.net/11449/308009
10.1007/s00521-024-09615-z
2-s2.0-85187645947
url http://dx.doi.org/10.1007/s00521-024-09615-z
https://hdl.handle.net/11449/308009
identifier_str_mv Neural Computing and Applications, v. 36, n. 18, p. 10445-10459, 2024.
1433-3058
0941-0643
10.1007/s00521-024-09615-z
2-s2.0-85187645947
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Neural Computing and Applications
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv 10445-10459
dc.source.none.fl_str_mv Scopus
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
repository.mail.fl_str_mv repositoriounesp@unesp.br
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