DeepCraftFuse: visual and deeply-learnable features work better together for esophageal cancer detection in patients with Barrett’s esophagus
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Publication Date: | 2024 |
Other Authors: | , , , , , , , , |
Format: | Article |
Language: | eng |
Source: | Repositório Institucional da UNESP |
Download full: | http://dx.doi.org/10.1007/s00521-024-09615-z https://hdl.handle.net/11449/308009 |
Summary: | Limitations in computer-assisted diagnosis include lack of labeled data and inability to model the relation between what experts see and what computers learn. Even though artificial intelligence and machine learning have demonstrated remarkable performances in medical image computing, their accountability and transparency level must be improved to transfer this success into clinical practice. The reliability of machine learning decisions must be explained and interpreted, especially for supporting the medical diagnosis. While deep learning techniques are broad so that unseen information might help learn patterns of interest, human insights to describe objects of interest help in decision-making. This paper proposes a novel approach, DeepCraftFuse, to address the challenge of combining information provided by deep networks with visual-based features to significantly enhance the correct identification of cancerous tissues in patients affected with Barrett’s esophagus (BE). We demonstrate that DeepCraftFuse outperforms state-of-the-art techniques on private and public datasets, reaching results of around 95% when distinguishing patients affected by BE that is either positive or negative to esophageal cancer. |
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DeepCraftFuse: visual and deeply-learnable features work better together for esophageal cancer detection in patients with Barrett’s esophagusAdenocarcinomaBarrett’s esophagusDeep learningMachine learningObject detectorLimitations in computer-assisted diagnosis include lack of labeled data and inability to model the relation between what experts see and what computers learn. Even though artificial intelligence and machine learning have demonstrated remarkable performances in medical image computing, their accountability and transparency level must be improved to transfer this success into clinical practice. The reliability of machine learning decisions must be explained and interpreted, especially for supporting the medical diagnosis. While deep learning techniques are broad so that unseen information might help learn patterns of interest, human insights to describe objects of interest help in decision-making. This paper proposes a novel approach, DeepCraftFuse, to address the challenge of combining information provided by deep networks with visual-based features to significantly enhance the correct identification of cancerous tissues in patients affected with Barrett’s esophagus (BE). We demonstrate that DeepCraftFuse outperforms state-of-the-art techniques on private and public datasets, reaching results of around 95% when distinguishing patients affected by BE that is either positive or negative to esophageal cancer.Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)Alexander von Humboldt-StiftungDepartment of Informatics Federal University of Espírito SantoRegensburg Medical Image Computing (ReMIC) Ostbayerische Technische Hochschule Regensburg (OTH Regensburg)Department of Computing São Paulo State UniversityDepartment of Gastroenterology University Hospital AugsburgDepartment of Computing São Paulo State UniversityFAPESP: 2013/07375-0FAPESP: 2014/12236-1FAPESP: 2016/19403-6FAPESP: 2017/04847-9FAPESP: 2019/08605-5CNPq: 306166/2014-3CNPq: 307066/2017-7Alexander von Humboldt-Stiftung: BEX 0581-16-0Federal University of Espírito SantoOstbayerische Technische Hochschule Regensburg (OTH Regensburg)Universidade Estadual Paulista (UNESP)University Hospital AugsburgSouza Jr, Luis A.Pacheco, André G. C.Passos, Leandro A. [UNESP]Santana, Marcos C. S. [UNESP]Mendel, RobertEbigbo, AlannaProbst, AndreasMessmann, HelmutPalm, ChristophPapa, João Paulo [UNESP]2025-04-29T20:11:00Z2024-06-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article10445-10459http://dx.doi.org/10.1007/s00521-024-09615-zNeural Computing and Applications, v. 36, n. 18, p. 10445-10459, 2024.1433-30580941-0643https://hdl.handle.net/11449/30800910.1007/s00521-024-09615-z2-s2.0-85187645947Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengNeural Computing and Applicationsinfo:eu-repo/semantics/openAccess2025-04-30T14:36:06Zoai:repositorio.unesp.br:11449/308009Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestrepositoriounesp@unesp.bropendoar:29462025-04-30T14:36:06Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false |
dc.title.none.fl_str_mv |
DeepCraftFuse: visual and deeply-learnable features work better together for esophageal cancer detection in patients with Barrett’s esophagus |
title |
DeepCraftFuse: visual and deeply-learnable features work better together for esophageal cancer detection in patients with Barrett’s esophagus |
spellingShingle |
DeepCraftFuse: visual and deeply-learnable features work better together for esophageal cancer detection in patients with Barrett’s esophagus Souza Jr, Luis A. Adenocarcinoma Barrett’s esophagus Deep learning Machine learning Object detector |
title_short |
DeepCraftFuse: visual and deeply-learnable features work better together for esophageal cancer detection in patients with Barrett’s esophagus |
title_full |
DeepCraftFuse: visual and deeply-learnable features work better together for esophageal cancer detection in patients with Barrett’s esophagus |
title_fullStr |
DeepCraftFuse: visual and deeply-learnable features work better together for esophageal cancer detection in patients with Barrett’s esophagus |
title_full_unstemmed |
DeepCraftFuse: visual and deeply-learnable features work better together for esophageal cancer detection in patients with Barrett’s esophagus |
title_sort |
DeepCraftFuse: visual and deeply-learnable features work better together for esophageal cancer detection in patients with Barrett’s esophagus |
author |
Souza Jr, Luis A. |
author_facet |
Souza Jr, Luis A. Pacheco, André G. C. Passos, Leandro A. [UNESP] Santana, Marcos C. S. [UNESP] Mendel, Robert Ebigbo, Alanna Probst, Andreas Messmann, Helmut Palm, Christoph Papa, João Paulo [UNESP] |
author_role |
author |
author2 |
Pacheco, André G. C. Passos, Leandro A. [UNESP] Santana, Marcos C. S. [UNESP] Mendel, Robert Ebigbo, Alanna Probst, Andreas Messmann, Helmut Palm, Christoph Papa, João Paulo [UNESP] |
author2_role |
author author author author author author author author author |
dc.contributor.none.fl_str_mv |
Federal University of Espírito Santo Ostbayerische Technische Hochschule Regensburg (OTH Regensburg) Universidade Estadual Paulista (UNESP) University Hospital Augsburg |
dc.contributor.author.fl_str_mv |
Souza Jr, Luis A. Pacheco, André G. C. Passos, Leandro A. [UNESP] Santana, Marcos C. S. [UNESP] Mendel, Robert Ebigbo, Alanna Probst, Andreas Messmann, Helmut Palm, Christoph Papa, João Paulo [UNESP] |
dc.subject.por.fl_str_mv |
Adenocarcinoma Barrett’s esophagus Deep learning Machine learning Object detector |
topic |
Adenocarcinoma Barrett’s esophagus Deep learning Machine learning Object detector |
description |
Limitations in computer-assisted diagnosis include lack of labeled data and inability to model the relation between what experts see and what computers learn. Even though artificial intelligence and machine learning have demonstrated remarkable performances in medical image computing, their accountability and transparency level must be improved to transfer this success into clinical practice. The reliability of machine learning decisions must be explained and interpreted, especially for supporting the medical diagnosis. While deep learning techniques are broad so that unseen information might help learn patterns of interest, human insights to describe objects of interest help in decision-making. This paper proposes a novel approach, DeepCraftFuse, to address the challenge of combining information provided by deep networks with visual-based features to significantly enhance the correct identification of cancerous tissues in patients affected with Barrett’s esophagus (BE). We demonstrate that DeepCraftFuse outperforms state-of-the-art techniques on private and public datasets, reaching results of around 95% when distinguishing patients affected by BE that is either positive or negative to esophageal cancer. |
publishDate |
2024 |
dc.date.none.fl_str_mv |
2024-06-01 2025-04-29T20:11:00Z |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://dx.doi.org/10.1007/s00521-024-09615-z Neural Computing and Applications, v. 36, n. 18, p. 10445-10459, 2024. 1433-3058 0941-0643 https://hdl.handle.net/11449/308009 10.1007/s00521-024-09615-z 2-s2.0-85187645947 |
url |
http://dx.doi.org/10.1007/s00521-024-09615-z https://hdl.handle.net/11449/308009 |
identifier_str_mv |
Neural Computing and Applications, v. 36, n. 18, p. 10445-10459, 2024. 1433-3058 0941-0643 10.1007/s00521-024-09615-z 2-s2.0-85187645947 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
Neural Computing and Applications |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
10445-10459 |
dc.source.none.fl_str_mv |
Scopus reponame:Repositório Institucional da UNESP instname:Universidade Estadual Paulista (UNESP) instacron:UNESP |
instname_str |
Universidade Estadual Paulista (UNESP) |
instacron_str |
UNESP |
institution |
UNESP |
reponame_str |
Repositório Institucional da UNESP |
collection |
Repositório Institucional da UNESP |
repository.name.fl_str_mv |
Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP) |
repository.mail.fl_str_mv |
repositoriounesp@unesp.br |
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1834482467209216000 |