IDENTIFICATION OF HOLSTEIN COWS CARRIERS OF COMPLEX VERTEBRAL MALFORMATION BY HIGH RESOLUTION MELTING CURVES (HRM)
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Publication Date: | 2019 |
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Format: | Article |
Language: | eng |
Source: | Archives of Veterinary Science (Online) |
Download full: | https://revistas.ufpr.br/veterinary/article/view/65494 |
Summary: | The objective of this study was the optimization and implementation of a reliable and economical molecular screening method for the detection of the mutant allele of CVM (complex vertebral malformation, c.559G>T, SLC35A3) by HRM analysis, as well as analyzing its existence in a representative sample of Holstein cows from the Milk Genomic DNA Bank of Uruguay. The optimization of the HRM methodology in the RotorGene™ 6000 equipment (Corbett Life Science, Australia) by amplification of the 79 bp PCR products clearly differentiated the two genotypes: homozygous, wild type: GG; and heterozygous, carrier for the mutation CVM: GT (c.559G>T; SLC35A3). In the analyzed sample, the frequency of the mutant allele (T) for CVM was high (q = 0.032), with a prevalence of carrier cows of 6.45%. It is concluded that the PCR-HRM analysis is a fast, easily interpretable, low cost, and highly accurate technique for the detection of this mutation in Holstein cattle, which may be implemented in genetic selection programs. |
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IDENTIFICATION OF HOLSTEIN COWS CARRIERS OF COMPLEX VERTEBRAL MALFORMATION BY HIGH RESOLUTION MELTING CURVES (HRM)HolsteinCVMhigh-resolution dissociation curve.The objective of this study was the optimization and implementation of a reliable and economical molecular screening method for the detection of the mutant allele of CVM (complex vertebral malformation, c.559G>T, SLC35A3) by HRM analysis, as well as analyzing its existence in a representative sample of Holstein cows from the Milk Genomic DNA Bank of Uruguay. The optimization of the HRM methodology in the RotorGene™ 6000 equipment (Corbett Life Science, Australia) by amplification of the 79 bp PCR products clearly differentiated the two genotypes: homozygous, wild type: GG; and heterozygous, carrier for the mutation CVM: GT (c.559G>T; SLC35A3). In the analyzed sample, the frequency of the mutant allele (T) for CVM was high (q = 0.032), with a prevalence of carrier cows of 6.45%. It is concluded that the PCR-HRM analysis is a fast, easily interpretable, low cost, and highly accurate technique for the detection of this mutation in Holstein cattle, which may be implemented in genetic selection programs.Universidade Federal do Paraná2019-12-31info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionapplication/pdfhttps://revistas.ufpr.br/veterinary/article/view/6549410.5380/avs.v24i4.65494Archives of Veterinary Science; v. 24 n. 4 (2019)Archives of Veterinary Science; Vol. 24 No. 4 (2019)2317-68221517-784X10.5380/avs.v24i4reponame:Archives of Veterinary Science (Online)instname:Universidade Federal do Paraná (UFPR)instacron:UFPRenghttps://revistas.ufpr.br/veterinary/article/view/65494/40219Copyright (c) 2019 Archives of Veterinary Scienceinfo:eu-repo/semantics/openAccessBranda Sica, AndreaNicolini, PaulaFederici, María TeresaLlambí, Silvia2020-01-02T17:35:09Zoai:ojs.pkp.sfu.ca:article/65494Revistahttps://revistas.ufpr.br/veterinary/indexPUBhttps://revistas.ufpr.br/veterinary/oaieditor.avs@ufpr.br || publish.avs@ufpr.br2317-68221517-784Xopendoar:2020-01-02T17:35:09Archives of Veterinary Science (Online) - Universidade Federal do Paraná (UFPR)false |
dc.title.none.fl_str_mv |
IDENTIFICATION OF HOLSTEIN COWS CARRIERS OF COMPLEX VERTEBRAL MALFORMATION BY HIGH RESOLUTION MELTING CURVES (HRM) |
title |
IDENTIFICATION OF HOLSTEIN COWS CARRIERS OF COMPLEX VERTEBRAL MALFORMATION BY HIGH RESOLUTION MELTING CURVES (HRM) |
spellingShingle |
IDENTIFICATION OF HOLSTEIN COWS CARRIERS OF COMPLEX VERTEBRAL MALFORMATION BY HIGH RESOLUTION MELTING CURVES (HRM) Branda Sica, Andrea Holstein CVM high-resolution dissociation curve. |
title_short |
IDENTIFICATION OF HOLSTEIN COWS CARRIERS OF COMPLEX VERTEBRAL MALFORMATION BY HIGH RESOLUTION MELTING CURVES (HRM) |
title_full |
IDENTIFICATION OF HOLSTEIN COWS CARRIERS OF COMPLEX VERTEBRAL MALFORMATION BY HIGH RESOLUTION MELTING CURVES (HRM) |
title_fullStr |
IDENTIFICATION OF HOLSTEIN COWS CARRIERS OF COMPLEX VERTEBRAL MALFORMATION BY HIGH RESOLUTION MELTING CURVES (HRM) |
title_full_unstemmed |
IDENTIFICATION OF HOLSTEIN COWS CARRIERS OF COMPLEX VERTEBRAL MALFORMATION BY HIGH RESOLUTION MELTING CURVES (HRM) |
title_sort |
IDENTIFICATION OF HOLSTEIN COWS CARRIERS OF COMPLEX VERTEBRAL MALFORMATION BY HIGH RESOLUTION MELTING CURVES (HRM) |
author |
Branda Sica, Andrea |
author_facet |
Branda Sica, Andrea Nicolini, Paula Federici, María Teresa Llambí, Silvia |
author_role |
author |
author2 |
Nicolini, Paula Federici, María Teresa Llambí, Silvia |
author2_role |
author author author |
dc.contributor.author.fl_str_mv |
Branda Sica, Andrea Nicolini, Paula Federici, María Teresa Llambí, Silvia |
dc.subject.por.fl_str_mv |
Holstein CVM high-resolution dissociation curve. |
topic |
Holstein CVM high-resolution dissociation curve. |
description |
The objective of this study was the optimization and implementation of a reliable and economical molecular screening method for the detection of the mutant allele of CVM (complex vertebral malformation, c.559G>T, SLC35A3) by HRM analysis, as well as analyzing its existence in a representative sample of Holstein cows from the Milk Genomic DNA Bank of Uruguay. The optimization of the HRM methodology in the RotorGene™ 6000 equipment (Corbett Life Science, Australia) by amplification of the 79 bp PCR products clearly differentiated the two genotypes: homozygous, wild type: GG; and heterozygous, carrier for the mutation CVM: GT (c.559G>T; SLC35A3). In the analyzed sample, the frequency of the mutant allele (T) for CVM was high (q = 0.032), with a prevalence of carrier cows of 6.45%. It is concluded that the PCR-HRM analysis is a fast, easily interpretable, low cost, and highly accurate technique for the detection of this mutation in Holstein cattle, which may be implemented in genetic selection programs. |
publishDate |
2019 |
dc.date.none.fl_str_mv |
2019-12-31 |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article info:eu-repo/semantics/publishedVersion |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
https://revistas.ufpr.br/veterinary/article/view/65494 10.5380/avs.v24i4.65494 |
url |
https://revistas.ufpr.br/veterinary/article/view/65494 |
identifier_str_mv |
10.5380/avs.v24i4.65494 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
https://revistas.ufpr.br/veterinary/article/view/65494/40219 |
dc.rights.driver.fl_str_mv |
Copyright (c) 2019 Archives of Veterinary Science info:eu-repo/semantics/openAccess |
rights_invalid_str_mv |
Copyright (c) 2019 Archives of Veterinary Science |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
application/pdf |
dc.publisher.none.fl_str_mv |
Universidade Federal do Paraná |
publisher.none.fl_str_mv |
Universidade Federal do Paraná |
dc.source.none.fl_str_mv |
Archives of Veterinary Science; v. 24 n. 4 (2019) Archives of Veterinary Science; Vol. 24 No. 4 (2019) 2317-6822 1517-784X 10.5380/avs.v24i4 reponame:Archives of Veterinary Science (Online) instname:Universidade Federal do Paraná (UFPR) instacron:UFPR |
instname_str |
Universidade Federal do Paraná (UFPR) |
instacron_str |
UFPR |
institution |
UFPR |
reponame_str |
Archives of Veterinary Science (Online) |
collection |
Archives of Veterinary Science (Online) |
repository.name.fl_str_mv |
Archives of Veterinary Science (Online) - Universidade Federal do Paraná (UFPR) |
repository.mail.fl_str_mv |
editor.avs@ufpr.br || publish.avs@ufpr.br |
_version_ |
1838280803015983104 |