IDENTIFICATION OF HOLSTEIN COWS CARRIERS OF COMPLEX VERTEBRAL MALFORMATION BY HIGH RESOLUTION MELTING CURVES (HRM)

Bibliographic Details
Main Author: Branda Sica, Andrea
Publication Date: 2019
Other Authors: Nicolini, Paula, Federici, María Teresa, Llambí, Silvia
Format: Article
Language: eng
Source: Archives of Veterinary Science (Online)
Download full: https://revistas.ufpr.br/veterinary/article/view/65494
Summary: The objective of this study was the optimization and implementation of a reliable and economical molecular screening method for the detection of the mutant allele of CVM (complex vertebral malformation, c.559G>T, SLC35A3) by HRM analysis, as well as analyzing its existence in a representative sample of Holstein cows from the Milk Genomic DNA Bank of Uruguay. The optimization of the HRM methodology in the RotorGene™ 6000 equipment (Corbett Life Science, Australia) by amplification of the 79 bp PCR products clearly differentiated the two genotypes: homozygous, wild type: GG; and heterozygous, carrier for the mutation CVM: GT (c.559G>T; SLC35A3). In the analyzed sample, the frequency of the mutant allele (T) for CVM was high (q = 0.032), with a prevalence of carrier cows of 6.45%. It is concluded that the PCR-HRM analysis is a fast, easily interpretable, low cost, and highly accurate technique for the detection of this mutation in Holstein cattle, which may be implemented in genetic selection programs.
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spelling IDENTIFICATION OF HOLSTEIN COWS CARRIERS OF COMPLEX VERTEBRAL MALFORMATION BY HIGH RESOLUTION MELTING CURVES (HRM)HolsteinCVMhigh-resolution dissociation curve.The objective of this study was the optimization and implementation of a reliable and economical molecular screening method for the detection of the mutant allele of CVM (complex vertebral malformation, c.559G>T, SLC35A3) by HRM analysis, as well as analyzing its existence in a representative sample of Holstein cows from the Milk Genomic DNA Bank of Uruguay. The optimization of the HRM methodology in the RotorGene™ 6000 equipment (Corbett Life Science, Australia) by amplification of the 79 bp PCR products clearly differentiated the two genotypes: homozygous, wild type: GG; and heterozygous, carrier for the mutation CVM: GT (c.559G>T; SLC35A3). In the analyzed sample, the frequency of the mutant allele (T) for CVM was high (q = 0.032), with a prevalence of carrier cows of 6.45%. It is concluded that the PCR-HRM analysis is a fast, easily interpretable, low cost, and highly accurate technique for the detection of this mutation in Holstein cattle, which may be implemented in genetic selection programs.Universidade Federal do Paraná2019-12-31info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionapplication/pdfhttps://revistas.ufpr.br/veterinary/article/view/6549410.5380/avs.v24i4.65494Archives of Veterinary Science; v. 24 n. 4 (2019)Archives of Veterinary Science; Vol. 24 No. 4 (2019)2317-68221517-784X10.5380/avs.v24i4reponame:Archives of Veterinary Science (Online)instname:Universidade Federal do Paraná (UFPR)instacron:UFPRenghttps://revistas.ufpr.br/veterinary/article/view/65494/40219Copyright (c) 2019 Archives of Veterinary Scienceinfo:eu-repo/semantics/openAccessBranda Sica, AndreaNicolini, PaulaFederici, María TeresaLlambí, Silvia2020-01-02T17:35:09Zoai:ojs.pkp.sfu.ca:article/65494Revistahttps://revistas.ufpr.br/veterinary/indexPUBhttps://revistas.ufpr.br/veterinary/oaieditor.avs@ufpr.br || publish.avs@ufpr.br2317-68221517-784Xopendoar:2020-01-02T17:35:09Archives of Veterinary Science (Online) - Universidade Federal do Paraná (UFPR)false
dc.title.none.fl_str_mv IDENTIFICATION OF HOLSTEIN COWS CARRIERS OF COMPLEX VERTEBRAL MALFORMATION BY HIGH RESOLUTION MELTING CURVES (HRM)
title IDENTIFICATION OF HOLSTEIN COWS CARRIERS OF COMPLEX VERTEBRAL MALFORMATION BY HIGH RESOLUTION MELTING CURVES (HRM)
spellingShingle IDENTIFICATION OF HOLSTEIN COWS CARRIERS OF COMPLEX VERTEBRAL MALFORMATION BY HIGH RESOLUTION MELTING CURVES (HRM)
Branda Sica, Andrea
Holstein
CVM
high-resolution dissociation curve.
title_short IDENTIFICATION OF HOLSTEIN COWS CARRIERS OF COMPLEX VERTEBRAL MALFORMATION BY HIGH RESOLUTION MELTING CURVES (HRM)
title_full IDENTIFICATION OF HOLSTEIN COWS CARRIERS OF COMPLEX VERTEBRAL MALFORMATION BY HIGH RESOLUTION MELTING CURVES (HRM)
title_fullStr IDENTIFICATION OF HOLSTEIN COWS CARRIERS OF COMPLEX VERTEBRAL MALFORMATION BY HIGH RESOLUTION MELTING CURVES (HRM)
title_full_unstemmed IDENTIFICATION OF HOLSTEIN COWS CARRIERS OF COMPLEX VERTEBRAL MALFORMATION BY HIGH RESOLUTION MELTING CURVES (HRM)
title_sort IDENTIFICATION OF HOLSTEIN COWS CARRIERS OF COMPLEX VERTEBRAL MALFORMATION BY HIGH RESOLUTION MELTING CURVES (HRM)
author Branda Sica, Andrea
author_facet Branda Sica, Andrea
Nicolini, Paula
Federici, María Teresa
Llambí, Silvia
author_role author
author2 Nicolini, Paula
Federici, María Teresa
Llambí, Silvia
author2_role author
author
author
dc.contributor.author.fl_str_mv Branda Sica, Andrea
Nicolini, Paula
Federici, María Teresa
Llambí, Silvia
dc.subject.por.fl_str_mv Holstein
CVM
high-resolution dissociation curve.
topic Holstein
CVM
high-resolution dissociation curve.
description The objective of this study was the optimization and implementation of a reliable and economical molecular screening method for the detection of the mutant allele of CVM (complex vertebral malformation, c.559G>T, SLC35A3) by HRM analysis, as well as analyzing its existence in a representative sample of Holstein cows from the Milk Genomic DNA Bank of Uruguay. The optimization of the HRM methodology in the RotorGene™ 6000 equipment (Corbett Life Science, Australia) by amplification of the 79 bp PCR products clearly differentiated the two genotypes: homozygous, wild type: GG; and heterozygous, carrier for the mutation CVM: GT (c.559G>T; SLC35A3). In the analyzed sample, the frequency of the mutant allele (T) for CVM was high (q = 0.032), with a prevalence of carrier cows of 6.45%. It is concluded that the PCR-HRM analysis is a fast, easily interpretable, low cost, and highly accurate technique for the detection of this mutation in Holstein cattle, which may be implemented in genetic selection programs.
publishDate 2019
dc.date.none.fl_str_mv 2019-12-31
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv https://revistas.ufpr.br/veterinary/article/view/65494
10.5380/avs.v24i4.65494
url https://revistas.ufpr.br/veterinary/article/view/65494
identifier_str_mv 10.5380/avs.v24i4.65494
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv https://revistas.ufpr.br/veterinary/article/view/65494/40219
dc.rights.driver.fl_str_mv Copyright (c) 2019 Archives of Veterinary Science
info:eu-repo/semantics/openAccess
rights_invalid_str_mv Copyright (c) 2019 Archives of Veterinary Science
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Universidade Federal do Paraná
publisher.none.fl_str_mv Universidade Federal do Paraná
dc.source.none.fl_str_mv Archives of Veterinary Science; v. 24 n. 4 (2019)
Archives of Veterinary Science; Vol. 24 No. 4 (2019)
2317-6822
1517-784X
10.5380/avs.v24i4
reponame:Archives of Veterinary Science (Online)
instname:Universidade Federal do Paraná (UFPR)
instacron:UFPR
instname_str Universidade Federal do Paraná (UFPR)
instacron_str UFPR
institution UFPR
reponame_str Archives of Veterinary Science (Online)
collection Archives of Veterinary Science (Online)
repository.name.fl_str_mv Archives of Veterinary Science (Online) - Universidade Federal do Paraná (UFPR)
repository.mail.fl_str_mv editor.avs@ufpr.br || publish.avs@ufpr.br
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