Fully Automatic 3D-TEE Segmentation for the Planning of Transcatheter Aortic Valve Implantation

Bibliographic Details
Main Author: Queirós, Sandro Filipe Monteiro
Publication Date: 2017
Other Authors: Papachristidis, Alexandros, Morais, Pedro André Gonçalves, Theodoropoulos, Konstantinos C., Fonseca, Jaime C., Monaghan, Mark J., Vilaça, João L., D’hooge, Jan
Format: Article
Language: eng
Source: Repositórios Científicos de Acesso Aberto de Portugal (RCAAP)
Download full: https://hdl.handle.net/1822/49658
Summary: A novel fully automatic framework for aortic valve (AV) trunk segmentation in three-dimensional (3-D) transesophageal echocardiography (TEE) datasets is proposed. The methodology combines a previously presented semiautomatic segmentation strategy by using shape-based B-spline Explicit Active Surfaces with two novel algorithms to automate the quantification of relevant AV measures. The first combines a fast rotation-invariant 3-D generalized Hough transform with a vessel-like dark tube detector to initialize the segmentation. After segmenting the AV wall, the second algorithm focuses on aligning this surface with the reference ones in order to estimate the short-axis (SAx) planes (at the left ventricular outflow tract, annulus, sinuses of Valsalva, and sinotubular junction) in which to perform the measurements. The framework has been tested in 20 3-D-TEE datasets with both stenotic and nonstenotic AVs. The initialization algorithm presented a median error of around 3 mm for the AV axis endpoints, with an overall feasibility of 90%. In its turn, the SAx detection algorithm showed to be highly reproducible, with indistinguishable results compared with the variability found between the experts' defined planes. Automatically extracted measures at the four levels showed a good agreement with the experts' ones, with limits of agreement similar to the interobserver variability. Moreover, a validation set of 20 additional stenotic AV datasets corroborated the method's applicability and accuracy. The proposed approach mitigates the variability associated with the manual quantification while significantly reducing the required analysis time (12 s versus 5 to 10 min), which shows its appeal for automatic dimensioning of the AV morphology in 3-D-TEE for the planning of transcatheter AV implantation.
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spelling Fully Automatic 3D-TEE Segmentation for the Planning of Transcatheter Aortic Valve ImplantationAortic valve (AV) segmentationAutomatic initializationFully automatic quantificationTranscatheter aortic valve implantation3-D transesophageal echocardio-graphy (TEE)Ciências Médicas::Biotecnologia MédicaScience & TechnologyA novel fully automatic framework for aortic valve (AV) trunk segmentation in three-dimensional (3-D) transesophageal echocardiography (TEE) datasets is proposed. The methodology combines a previously presented semiautomatic segmentation strategy by using shape-based B-spline Explicit Active Surfaces with two novel algorithms to automate the quantification of relevant AV measures. The first combines a fast rotation-invariant 3-D generalized Hough transform with a vessel-like dark tube detector to initialize the segmentation. After segmenting the AV wall, the second algorithm focuses on aligning this surface with the reference ones in order to estimate the short-axis (SAx) planes (at the left ventricular outflow tract, annulus, sinuses of Valsalva, and sinotubular junction) in which to perform the measurements. The framework has been tested in 20 3-D-TEE datasets with both stenotic and nonstenotic AVs. The initialization algorithm presented a median error of around 3 mm for the AV axis endpoints, with an overall feasibility of 90%. In its turn, the SAx detection algorithm showed to be highly reproducible, with indistinguishable results compared with the variability found between the experts' defined planes. Automatically extracted measures at the four levels showed a good agreement with the experts' ones, with limits of agreement similar to the interobserver variability. Moreover, a validation set of 20 additional stenotic AV datasets corroborated the method's applicability and accuracy. The proposed approach mitigates the variability associated with the manual quantification while significantly reducing the required analysis time (12 s versus 5 to 10 min), which shows its appeal for automatic dimensioning of the AV morphology in 3-D-TEE for the planning of transcatheter AV implantation.This work was supported by the project "ON.2 SR&TD Integrated Program (Norte-07-0124-FEDER-000017)" cofunded by the Programa Operacional Regional do Norte (ON.2- O Novo Norte), Quadro de Referencia Estrategico Nacional, through Fundo Europeu de Desenvolvimento Regional. The work of S. Queiros and P. Morais was supported by the FCT-Fundacao para a Ciencia e a Tecnologia and the European Social Found through the Programa Operacional Capital Humano in the scope of the Ph.D. Grants SFRH/BD/93443/2013 and SFRH/BD/95438/2013, respectively. J. L. Vilaca and J. D'hooge are joint last authors. Asterisk indicates corresponding author.info:eu-repo/semantics/publishedVersionInstitute of Electrical and Electronics Engineers (IEEE)Universidade do MinhoQueirós, Sandro Filipe MonteiroPapachristidis, AlexandrosMorais, Pedro André GonçalvesTheodoropoulos, Konstantinos C.Fonseca, Jaime C.Monaghan, Mark J.Vilaça, João L.D’hooge, Jan2017-08-032017-08-03T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttps://hdl.handle.net/1822/49658engQueirós, S., Papachristidis, A., Morais, P., Theodoropoulos, K. C., Fonseca, J. C., Monaghan, M. J., ... & D’hooge, J. (2017). Fully Automatic 3-D-TEE Segmentation for the Planning of Transcatheter Aortic Valve Implantation. IEEE Transactions on Biomedical Engineering, 64(8), 1711-17200018-929410.1109/TBME.2016.261740128113205http://ieeexplore.ieee.org/abstract/document/7590022/?reload=trueinfo:eu-repo/semantics/openAccessreponame:Repositórios Científicos de Acesso Aberto de Portugal (RCAAP)instname:FCCN, serviços digitais da FCT – Fundação para a Ciência e a Tecnologiainstacron:RCAAP2024-05-11T05:48:43Zoai:repositorium.sdum.uminho.pt:1822/49658Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireinfo@rcaap.ptopendoar:https://opendoar.ac.uk/repository/71602025-05-28T15:31:07.629399Repositórios Científicos de Acesso Aberto de Portugal (RCAAP) - FCCN, serviços digitais da FCT – Fundação para a Ciência e a Tecnologiafalse
dc.title.none.fl_str_mv Fully Automatic 3D-TEE Segmentation for the Planning of Transcatheter Aortic Valve Implantation
title Fully Automatic 3D-TEE Segmentation for the Planning of Transcatheter Aortic Valve Implantation
spellingShingle Fully Automatic 3D-TEE Segmentation for the Planning of Transcatheter Aortic Valve Implantation
Queirós, Sandro Filipe Monteiro
Aortic valve (AV) segmentation
Automatic initialization
Fully automatic quantification
Transcatheter aortic valve implantation
3-D transesophageal echocardio-graphy (TEE)
Ciências Médicas::Biotecnologia Médica
Science & Technology
title_short Fully Automatic 3D-TEE Segmentation for the Planning of Transcatheter Aortic Valve Implantation
title_full Fully Automatic 3D-TEE Segmentation for the Planning of Transcatheter Aortic Valve Implantation
title_fullStr Fully Automatic 3D-TEE Segmentation for the Planning of Transcatheter Aortic Valve Implantation
title_full_unstemmed Fully Automatic 3D-TEE Segmentation for the Planning of Transcatheter Aortic Valve Implantation
title_sort Fully Automatic 3D-TEE Segmentation for the Planning of Transcatheter Aortic Valve Implantation
author Queirós, Sandro Filipe Monteiro
author_facet Queirós, Sandro Filipe Monteiro
Papachristidis, Alexandros
Morais, Pedro André Gonçalves
Theodoropoulos, Konstantinos C.
Fonseca, Jaime C.
Monaghan, Mark J.
Vilaça, João L.
D’hooge, Jan
author_role author
author2 Papachristidis, Alexandros
Morais, Pedro André Gonçalves
Theodoropoulos, Konstantinos C.
Fonseca, Jaime C.
Monaghan, Mark J.
Vilaça, João L.
D’hooge, Jan
author2_role author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv Universidade do Minho
dc.contributor.author.fl_str_mv Queirós, Sandro Filipe Monteiro
Papachristidis, Alexandros
Morais, Pedro André Gonçalves
Theodoropoulos, Konstantinos C.
Fonseca, Jaime C.
Monaghan, Mark J.
Vilaça, João L.
D’hooge, Jan
dc.subject.por.fl_str_mv Aortic valve (AV) segmentation
Automatic initialization
Fully automatic quantification
Transcatheter aortic valve implantation
3-D transesophageal echocardio-graphy (TEE)
Ciências Médicas::Biotecnologia Médica
Science & Technology
topic Aortic valve (AV) segmentation
Automatic initialization
Fully automatic quantification
Transcatheter aortic valve implantation
3-D transesophageal echocardio-graphy (TEE)
Ciências Médicas::Biotecnologia Médica
Science & Technology
description A novel fully automatic framework for aortic valve (AV) trunk segmentation in three-dimensional (3-D) transesophageal echocardiography (TEE) datasets is proposed. The methodology combines a previously presented semiautomatic segmentation strategy by using shape-based B-spline Explicit Active Surfaces with two novel algorithms to automate the quantification of relevant AV measures. The first combines a fast rotation-invariant 3-D generalized Hough transform with a vessel-like dark tube detector to initialize the segmentation. After segmenting the AV wall, the second algorithm focuses on aligning this surface with the reference ones in order to estimate the short-axis (SAx) planes (at the left ventricular outflow tract, annulus, sinuses of Valsalva, and sinotubular junction) in which to perform the measurements. The framework has been tested in 20 3-D-TEE datasets with both stenotic and nonstenotic AVs. The initialization algorithm presented a median error of around 3 mm for the AV axis endpoints, with an overall feasibility of 90%. In its turn, the SAx detection algorithm showed to be highly reproducible, with indistinguishable results compared with the variability found between the experts' defined planes. Automatically extracted measures at the four levels showed a good agreement with the experts' ones, with limits of agreement similar to the interobserver variability. Moreover, a validation set of 20 additional stenotic AV datasets corroborated the method's applicability and accuracy. The proposed approach mitigates the variability associated with the manual quantification while significantly reducing the required analysis time (12 s versus 5 to 10 min), which shows its appeal for automatic dimensioning of the AV morphology in 3-D-TEE for the planning of transcatheter AV implantation.
publishDate 2017
dc.date.none.fl_str_mv 2017-08-03
2017-08-03T00:00:00Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv https://hdl.handle.net/1822/49658
url https://hdl.handle.net/1822/49658
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Queirós, S., Papachristidis, A., Morais, P., Theodoropoulos, K. C., Fonseca, J. C., Monaghan, M. J., ... & D’hooge, J. (2017). Fully Automatic 3-D-TEE Segmentation for the Planning of Transcatheter Aortic Valve Implantation. IEEE Transactions on Biomedical Engineering, 64(8), 1711-1720
0018-9294
10.1109/TBME.2016.2617401
28113205
http://ieeexplore.ieee.org/abstract/document/7590022/?reload=true
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Institute of Electrical and Electronics Engineers (IEEE)
publisher.none.fl_str_mv Institute of Electrical and Electronics Engineers (IEEE)
dc.source.none.fl_str_mv reponame:Repositórios Científicos de Acesso Aberto de Portugal (RCAAP)
instname:FCCN, serviços digitais da FCT – Fundação para a Ciência e a Tecnologia
instacron:RCAAP
instname_str FCCN, serviços digitais da FCT – Fundação para a Ciência e a Tecnologia
instacron_str RCAAP
institution RCAAP
reponame_str Repositórios Científicos de Acesso Aberto de Portugal (RCAAP)
collection Repositórios Científicos de Acesso Aberto de Portugal (RCAAP)
repository.name.fl_str_mv Repositórios Científicos de Acesso Aberto de Portugal (RCAAP) - FCCN, serviços digitais da FCT – Fundação para a Ciência e a Tecnologia
repository.mail.fl_str_mv info@rcaap.pt
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