GPATCH11 variants cause mis-splicing and early-onset retinal dystrophy with neurological impairment
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Publication Date: | 2024 |
Other Authors: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
Format: | Article |
Language: | eng |
Source: | Repositórios Científicos de Acesso Aberto de Portugal (RCAAP) |
Download full: | http://hdl.handle.net/10362/175995 |
Summary: | 310030_204285s from the Swiss National Science Foundation to C.R. J.M.R. is member of the European Reference Network for Rare Eye Diseases (ERN-EYE), which is co-funded by the Health Program of the European Union under the Framework Partnership Agreement n\u00B0739534. The authors thank the Transgenesis, Neurobehavioral and Metabolism, Necker Bioimage Analysis, Cell Imaging, Histology (Sofian Ameur, Damien Conrozier, and Sophie Berissi), Cytometry, Genomic, and Proteomic platforms for valuable discussions and help. Special thanks go to Nicolas Cagnard for the submission to BioStudies. We acknowledge the sequencing and bioinformatics expertise of the I2BC High-throughput sequencing facility, supported by France G\u00E9nomique (funded by the French National Program \u201CInvestissement d\u2019Avenir\u201D ANR-10-INBS-09. The authors would like to acknowledge all patients and their families for participating in this study. The authors are also grateful to Virginie G. Peter and Raquel Rodriguez for their help throughout the study and to Sitta F\u00F6hr for careful proofreading of the manuscript. This research was made possible through access to the data generated by the France Genomic Medicine Plan 2025 and the authors thank Dr. Marine Lebrun for her help in the genome analysis. Publisher Copyright: © The Author(s) 2024. |
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GPATCH11 variants cause mis-splicing and early-onset retinal dystrophy with neurological impairmentChemistry(all)Biochemistry, Genetics and Molecular Biology(all)Physics and Astronomy(all)310030_204285s from the Swiss National Science Foundation to C.R. J.M.R. is member of the European Reference Network for Rare Eye Diseases (ERN-EYE), which is co-funded by the Health Program of the European Union under the Framework Partnership Agreement n\u00B0739534. The authors thank the Transgenesis, Neurobehavioral and Metabolism, Necker Bioimage Analysis, Cell Imaging, Histology (Sofian Ameur, Damien Conrozier, and Sophie Berissi), Cytometry, Genomic, and Proteomic platforms for valuable discussions and help. Special thanks go to Nicolas Cagnard for the submission to BioStudies. We acknowledge the sequencing and bioinformatics expertise of the I2BC High-throughput sequencing facility, supported by France G\u00E9nomique (funded by the French National Program \u201CInvestissement d\u2019Avenir\u201D ANR-10-INBS-09. The authors would like to acknowledge all patients and their families for participating in this study. The authors are also grateful to Virginie G. Peter and Raquel Rodriguez for their help throughout the study and to Sitta F\u00F6hr for careful proofreading of the manuscript. This research was made possible through access to the data generated by the France Genomic Medicine Plan 2025 and the authors thank Dr. Marine Lebrun for her help in the genome analysis. Publisher Copyright: © The Author(s) 2024.Here we conduct a study involving 12 individuals with retinal dystrophy, neurological impairment, and skeletal abnormalities, with special focus on GPATCH11, a lesser-known G-patch domain-containing protein, regulator of RNA metabolism. To elucidate its role, we study fibroblasts from unaffected individuals and patients carrying the recurring c.328+1 G > T mutation, which specifically removes the main part of the G-patch domain while preserving the other domains. Additionally, we generate a mouse model replicating the patients’ phenotypic defects, including retinal dystrophy and behavioral abnormalities. Our results reveal a subcellular localization of GPATCH11 characterized by a diffuse presence in the nucleoplasm, as well as centrosomal localization, suggesting potential functions in RNA and cilia metabolism. Transcriptomic analysis performed on mouse retina detect dysregulation in both gene expression and splicing activity, impacting key processes such as photoreceptor light responses, RNA regulation, and primary cilia-associated metabolism. Proteomic analysis of mouse retina confirms the roles GPATCH11 plays in RNA processing, splicing, and transcription regulation, while also suggesting additional functions in synaptic plasticity and nuclear stress response. Our research provides insights into the diverse roles of GPATCH11 and identifies that the mutations affecting this protein are responsible for a recently characterized described syndrome.NOVA Medical School|Faculdade de Ciências Médicas (NMS|FCM)iNOVA4Health - pólo NMSRUNZanetti, AndreaDujardin, GwendalFares-Taie, LucasAmiel, JeanneRoger, Jérôme E.Audo, IsabelleRobert, Matthieu P.David, PierreJung, VincentGoudin, NicolasGuerrera, Ida ChiaraMoriceau, StéphanieAmana, DanielleAssia Batzir, NuritBachar-Zipori, AnatBasel Salmon, LinaBoddaert, NathalieBriault, SylvainBruel, Ange LineCostet-Fighiera, ChristineCoutinho Santos, LuisaGitiaux, CyrilKaminska, KarolinaKuentz, PaulOrenstein, NaamaPhilip-Sarles, NicolePlutino, MorganeQuinodoz, MathieuSantos, CristinaSigaudy, SabineSoeiro e Sá, MarianaSofrin, EfratSousa, Ana BertaSousa-Luis, RuiThauvin-Robinet, Christelvan Dijk, Erwin L.Zaafrane-Khachnaoui, KhaoulaZur, DinahKaplan, JosselineRivolta, CarloRozet, Jean MichelPerrault, Isabelle2024-11-28T23:12:27Z2024-122024-12-01T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://hdl.handle.net/10362/175995eng2041-1723PURE: 103925969https://doi.org/10.1038/s41467-024-54549-8info:eu-repo/semantics/openAccessreponame:Repositórios Científicos de Acesso Aberto de Portugal (RCAAP)instname:FCCN, serviços digitais da FCT – Fundação para a Ciência e a Tecnologiainstacron:RCAAP2025-04-14T01:38:00Zoai:run.unl.pt:10362/175995Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireinfo@rcaap.ptopendoar:https://opendoar.ac.uk/repository/71602025-05-28T19:16:52.661834Repositórios Científicos de Acesso Aberto de Portugal (RCAAP) - FCCN, serviços digitais da FCT – Fundação para a Ciência e a Tecnologiafalse |
dc.title.none.fl_str_mv |
GPATCH11 variants cause mis-splicing and early-onset retinal dystrophy with neurological impairment |
title |
GPATCH11 variants cause mis-splicing and early-onset retinal dystrophy with neurological impairment |
spellingShingle |
GPATCH11 variants cause mis-splicing and early-onset retinal dystrophy with neurological impairment Zanetti, Andrea Chemistry(all) Biochemistry, Genetics and Molecular Biology(all) Physics and Astronomy(all) |
title_short |
GPATCH11 variants cause mis-splicing and early-onset retinal dystrophy with neurological impairment |
title_full |
GPATCH11 variants cause mis-splicing and early-onset retinal dystrophy with neurological impairment |
title_fullStr |
GPATCH11 variants cause mis-splicing and early-onset retinal dystrophy with neurological impairment |
title_full_unstemmed |
GPATCH11 variants cause mis-splicing and early-onset retinal dystrophy with neurological impairment |
title_sort |
GPATCH11 variants cause mis-splicing and early-onset retinal dystrophy with neurological impairment |
author |
Zanetti, Andrea |
author_facet |
Zanetti, Andrea Dujardin, Gwendal Fares-Taie, Lucas Amiel, Jeanne Roger, Jérôme E. Audo, Isabelle Robert, Matthieu P. David, Pierre Jung, Vincent Goudin, Nicolas Guerrera, Ida Chiara Moriceau, Stéphanie Amana, Danielle Assia Batzir, Nurit Bachar-Zipori, Anat Basel Salmon, Lina Boddaert, Nathalie Briault, Sylvain Bruel, Ange Line Costet-Fighiera, Christine Coutinho Santos, Luisa Gitiaux, Cyril Kaminska, Karolina Kuentz, Paul Orenstein, Naama Philip-Sarles, Nicole Plutino, Morgane Quinodoz, Mathieu Santos, Cristina Sigaudy, Sabine Soeiro e Sá, Mariana Sofrin, Efrat Sousa, Ana Berta Sousa-Luis, Rui Thauvin-Robinet, Christel van Dijk, Erwin L. Zaafrane-Khachnaoui, Khaoula Zur, Dinah Kaplan, Josseline Rivolta, Carlo Rozet, Jean Michel Perrault, Isabelle |
author_role |
author |
author2 |
Dujardin, Gwendal Fares-Taie, Lucas Amiel, Jeanne Roger, Jérôme E. Audo, Isabelle Robert, Matthieu P. David, Pierre Jung, Vincent Goudin, Nicolas Guerrera, Ida Chiara Moriceau, Stéphanie Amana, Danielle Assia Batzir, Nurit Bachar-Zipori, Anat Basel Salmon, Lina Boddaert, Nathalie Briault, Sylvain Bruel, Ange Line Costet-Fighiera, Christine Coutinho Santos, Luisa Gitiaux, Cyril Kaminska, Karolina Kuentz, Paul Orenstein, Naama Philip-Sarles, Nicole Plutino, Morgane Quinodoz, Mathieu Santos, Cristina Sigaudy, Sabine Soeiro e Sá, Mariana Sofrin, Efrat Sousa, Ana Berta Sousa-Luis, Rui Thauvin-Robinet, Christel van Dijk, Erwin L. Zaafrane-Khachnaoui, Khaoula Zur, Dinah Kaplan, Josseline Rivolta, Carlo Rozet, Jean Michel Perrault, Isabelle |
author2_role |
author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author |
dc.contributor.none.fl_str_mv |
NOVA Medical School|Faculdade de Ciências Médicas (NMS|FCM) iNOVA4Health - pólo NMS RUN |
dc.contributor.author.fl_str_mv |
Zanetti, Andrea Dujardin, Gwendal Fares-Taie, Lucas Amiel, Jeanne Roger, Jérôme E. Audo, Isabelle Robert, Matthieu P. David, Pierre Jung, Vincent Goudin, Nicolas Guerrera, Ida Chiara Moriceau, Stéphanie Amana, Danielle Assia Batzir, Nurit Bachar-Zipori, Anat Basel Salmon, Lina Boddaert, Nathalie Briault, Sylvain Bruel, Ange Line Costet-Fighiera, Christine Coutinho Santos, Luisa Gitiaux, Cyril Kaminska, Karolina Kuentz, Paul Orenstein, Naama Philip-Sarles, Nicole Plutino, Morgane Quinodoz, Mathieu Santos, Cristina Sigaudy, Sabine Soeiro e Sá, Mariana Sofrin, Efrat Sousa, Ana Berta Sousa-Luis, Rui Thauvin-Robinet, Christel van Dijk, Erwin L. Zaafrane-Khachnaoui, Khaoula Zur, Dinah Kaplan, Josseline Rivolta, Carlo Rozet, Jean Michel Perrault, Isabelle |
dc.subject.por.fl_str_mv |
Chemistry(all) Biochemistry, Genetics and Molecular Biology(all) Physics and Astronomy(all) |
topic |
Chemistry(all) Biochemistry, Genetics and Molecular Biology(all) Physics and Astronomy(all) |
description |
310030_204285s from the Swiss National Science Foundation to C.R. J.M.R. is member of the European Reference Network for Rare Eye Diseases (ERN-EYE), which is co-funded by the Health Program of the European Union under the Framework Partnership Agreement n\u00B0739534. The authors thank the Transgenesis, Neurobehavioral and Metabolism, Necker Bioimage Analysis, Cell Imaging, Histology (Sofian Ameur, Damien Conrozier, and Sophie Berissi), Cytometry, Genomic, and Proteomic platforms for valuable discussions and help. Special thanks go to Nicolas Cagnard for the submission to BioStudies. We acknowledge the sequencing and bioinformatics expertise of the I2BC High-throughput sequencing facility, supported by France G\u00E9nomique (funded by the French National Program \u201CInvestissement d\u2019Avenir\u201D ANR-10-INBS-09. The authors would like to acknowledge all patients and their families for participating in this study. The authors are also grateful to Virginie G. Peter and Raquel Rodriguez for their help throughout the study and to Sitta F\u00F6hr for careful proofreading of the manuscript. This research was made possible through access to the data generated by the France Genomic Medicine Plan 2025 and the authors thank Dr. Marine Lebrun for her help in the genome analysis. Publisher Copyright: © The Author(s) 2024. |
publishDate |
2024 |
dc.date.none.fl_str_mv |
2024-11-28T23:12:27Z 2024-12 2024-12-01T00:00:00Z |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
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info:eu-repo/semantics/article |
format |
article |
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publishedVersion |
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http://hdl.handle.net/10362/175995 |
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dc.language.iso.fl_str_mv |
eng |
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eng |
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2041-1723 PURE: 103925969 https://doi.org/10.1038/s41467-024-54549-8 |
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info:eu-repo/semantics/openAccess |
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openAccess |
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