GPATCH11 variants cause mis-splicing and early-onset retinal dystrophy with neurological impairment

Bibliographic Details
Main Author: Zanetti, Andrea
Publication Date: 2024
Other Authors: Dujardin, Gwendal, Fares-Taie, Lucas, Amiel, Jeanne, Roger, Jérôme E., Audo, Isabelle, Robert, Matthieu P., David, Pierre, Jung, Vincent, Goudin, Nicolas, Guerrera, Ida Chiara, Moriceau, Stéphanie, Amana, Danielle, Assia Batzir, Nurit, Bachar-Zipori, Anat, Basel Salmon, Lina, Boddaert, Nathalie, Briault, Sylvain, Bruel, Ange Line, Costet-Fighiera, Christine, Coutinho Santos, Luisa, Gitiaux, Cyril, Kaminska, Karolina, Kuentz, Paul, Orenstein, Naama, Philip-Sarles, Nicole, Plutino, Morgane, Quinodoz, Mathieu, Santos, Cristina, Sigaudy, Sabine, Soeiro e Sá, Mariana, Sofrin, Efrat, Sousa, Ana Berta, Sousa-Luis, Rui, Thauvin-Robinet, Christel, van Dijk, Erwin L., Zaafrane-Khachnaoui, Khaoula, Zur, Dinah, Kaplan, Josseline, Rivolta, Carlo, Rozet, Jean Michel, Perrault, Isabelle
Format: Article
Language: eng
Source: Repositórios Científicos de Acesso Aberto de Portugal (RCAAP)
Download full: http://hdl.handle.net/10362/175995
Summary: 310030_204285s from the Swiss National Science Foundation to C.R. J.M.R. is member of the European Reference Network for Rare Eye Diseases (ERN-EYE), which is co-funded by the Health Program of the European Union under the Framework Partnership Agreement n\u00B0739534. The authors thank the Transgenesis, Neurobehavioral and Metabolism, Necker Bioimage Analysis, Cell Imaging, Histology (Sofian Ameur, Damien Conrozier, and Sophie Berissi), Cytometry, Genomic, and Proteomic platforms for valuable discussions and help. Special thanks go to Nicolas Cagnard for the submission to BioStudies. We acknowledge the sequencing and bioinformatics expertise of the I2BC High-throughput sequencing facility, supported by France G\u00E9nomique (funded by the French National Program \u201CInvestissement d\u2019Avenir\u201D ANR-10-INBS-09. The authors would like to acknowledge all patients and their families for participating in this study. The authors are also grateful to Virginie G. Peter and Raquel Rodriguez for their help throughout the study and to Sitta F\u00F6hr for careful proofreading of the manuscript. This research was made possible through access to the data generated by the France Genomic Medicine Plan 2025 and the authors thank Dr. Marine Lebrun for her help in the genome analysis. Publisher Copyright: © The Author(s) 2024.
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spelling GPATCH11 variants cause mis-splicing and early-onset retinal dystrophy with neurological impairmentChemistry(all)Biochemistry, Genetics and Molecular Biology(all)Physics and Astronomy(all)310030_204285s from the Swiss National Science Foundation to C.R. J.M.R. is member of the European Reference Network for Rare Eye Diseases (ERN-EYE), which is co-funded by the Health Program of the European Union under the Framework Partnership Agreement n\u00B0739534. The authors thank the Transgenesis, Neurobehavioral and Metabolism, Necker Bioimage Analysis, Cell Imaging, Histology (Sofian Ameur, Damien Conrozier, and Sophie Berissi), Cytometry, Genomic, and Proteomic platforms for valuable discussions and help. Special thanks go to Nicolas Cagnard for the submission to BioStudies. We acknowledge the sequencing and bioinformatics expertise of the I2BC High-throughput sequencing facility, supported by France G\u00E9nomique (funded by the French National Program \u201CInvestissement d\u2019Avenir\u201D ANR-10-INBS-09. The authors would like to acknowledge all patients and their families for participating in this study. The authors are also grateful to Virginie G. Peter and Raquel Rodriguez for their help throughout the study and to Sitta F\u00F6hr for careful proofreading of the manuscript. This research was made possible through access to the data generated by the France Genomic Medicine Plan 2025 and the authors thank Dr. Marine Lebrun for her help in the genome analysis. Publisher Copyright: © The Author(s) 2024.Here we conduct a study involving 12 individuals with retinal dystrophy, neurological impairment, and skeletal abnormalities, with special focus on GPATCH11, a lesser-known G-patch domain-containing protein, regulator of RNA metabolism. To elucidate its role, we study fibroblasts from unaffected individuals and patients carrying the recurring c.328+1 G > T mutation, which specifically removes the main part of the G-patch domain while preserving the other domains. Additionally, we generate a mouse model replicating the patients’ phenotypic defects, including retinal dystrophy and behavioral abnormalities. Our results reveal a subcellular localization of GPATCH11 characterized by a diffuse presence in the nucleoplasm, as well as centrosomal localization, suggesting potential functions in RNA and cilia metabolism. Transcriptomic analysis performed on mouse retina detect dysregulation in both gene expression and splicing activity, impacting key processes such as photoreceptor light responses, RNA regulation, and primary cilia-associated metabolism. Proteomic analysis of mouse retina confirms the roles GPATCH11 plays in RNA processing, splicing, and transcription regulation, while also suggesting additional functions in synaptic plasticity and nuclear stress response. Our research provides insights into the diverse roles of GPATCH11 and identifies that the mutations affecting this protein are responsible for a recently characterized described syndrome.NOVA Medical School|Faculdade de Ciências Médicas (NMS|FCM)iNOVA4Health - pólo NMSRUNZanetti, AndreaDujardin, GwendalFares-Taie, LucasAmiel, JeanneRoger, Jérôme E.Audo, IsabelleRobert, Matthieu P.David, PierreJung, VincentGoudin, NicolasGuerrera, Ida ChiaraMoriceau, StéphanieAmana, DanielleAssia Batzir, NuritBachar-Zipori, AnatBasel Salmon, LinaBoddaert, NathalieBriault, SylvainBruel, Ange LineCostet-Fighiera, ChristineCoutinho Santos, LuisaGitiaux, CyrilKaminska, KarolinaKuentz, PaulOrenstein, NaamaPhilip-Sarles, NicolePlutino, MorganeQuinodoz, MathieuSantos, CristinaSigaudy, SabineSoeiro e Sá, MarianaSofrin, EfratSousa, Ana BertaSousa-Luis, RuiThauvin-Robinet, Christelvan Dijk, Erwin L.Zaafrane-Khachnaoui, KhaoulaZur, DinahKaplan, JosselineRivolta, CarloRozet, Jean MichelPerrault, Isabelle2024-11-28T23:12:27Z2024-122024-12-01T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://hdl.handle.net/10362/175995eng2041-1723PURE: 103925969https://doi.org/10.1038/s41467-024-54549-8info:eu-repo/semantics/openAccessreponame:Repositórios Científicos de Acesso Aberto de Portugal (RCAAP)instname:FCCN, serviços digitais da FCT – Fundação para a Ciência e a Tecnologiainstacron:RCAAP2025-04-14T01:38:00Zoai:run.unl.pt:10362/175995Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireinfo@rcaap.ptopendoar:https://opendoar.ac.uk/repository/71602025-05-28T19:16:52.661834Repositórios Científicos de Acesso Aberto de Portugal (RCAAP) - FCCN, serviços digitais da FCT – Fundação para a Ciência e a Tecnologiafalse
dc.title.none.fl_str_mv GPATCH11 variants cause mis-splicing and early-onset retinal dystrophy with neurological impairment
title GPATCH11 variants cause mis-splicing and early-onset retinal dystrophy with neurological impairment
spellingShingle GPATCH11 variants cause mis-splicing and early-onset retinal dystrophy with neurological impairment
Zanetti, Andrea
Chemistry(all)
Biochemistry, Genetics and Molecular Biology(all)
Physics and Astronomy(all)
title_short GPATCH11 variants cause mis-splicing and early-onset retinal dystrophy with neurological impairment
title_full GPATCH11 variants cause mis-splicing and early-onset retinal dystrophy with neurological impairment
title_fullStr GPATCH11 variants cause mis-splicing and early-onset retinal dystrophy with neurological impairment
title_full_unstemmed GPATCH11 variants cause mis-splicing and early-onset retinal dystrophy with neurological impairment
title_sort GPATCH11 variants cause mis-splicing and early-onset retinal dystrophy with neurological impairment
author Zanetti, Andrea
author_facet Zanetti, Andrea
Dujardin, Gwendal
Fares-Taie, Lucas
Amiel, Jeanne
Roger, Jérôme E.
Audo, Isabelle
Robert, Matthieu P.
David, Pierre
Jung, Vincent
Goudin, Nicolas
Guerrera, Ida Chiara
Moriceau, Stéphanie
Amana, Danielle
Assia Batzir, Nurit
Bachar-Zipori, Anat
Basel Salmon, Lina
Boddaert, Nathalie
Briault, Sylvain
Bruel, Ange Line
Costet-Fighiera, Christine
Coutinho Santos, Luisa
Gitiaux, Cyril
Kaminska, Karolina
Kuentz, Paul
Orenstein, Naama
Philip-Sarles, Nicole
Plutino, Morgane
Quinodoz, Mathieu
Santos, Cristina
Sigaudy, Sabine
Soeiro e Sá, Mariana
Sofrin, Efrat
Sousa, Ana Berta
Sousa-Luis, Rui
Thauvin-Robinet, Christel
van Dijk, Erwin L.
Zaafrane-Khachnaoui, Khaoula
Zur, Dinah
Kaplan, Josseline
Rivolta, Carlo
Rozet, Jean Michel
Perrault, Isabelle
author_role author
author2 Dujardin, Gwendal
Fares-Taie, Lucas
Amiel, Jeanne
Roger, Jérôme E.
Audo, Isabelle
Robert, Matthieu P.
David, Pierre
Jung, Vincent
Goudin, Nicolas
Guerrera, Ida Chiara
Moriceau, Stéphanie
Amana, Danielle
Assia Batzir, Nurit
Bachar-Zipori, Anat
Basel Salmon, Lina
Boddaert, Nathalie
Briault, Sylvain
Bruel, Ange Line
Costet-Fighiera, Christine
Coutinho Santos, Luisa
Gitiaux, Cyril
Kaminska, Karolina
Kuentz, Paul
Orenstein, Naama
Philip-Sarles, Nicole
Plutino, Morgane
Quinodoz, Mathieu
Santos, Cristina
Sigaudy, Sabine
Soeiro e Sá, Mariana
Sofrin, Efrat
Sousa, Ana Berta
Sousa-Luis, Rui
Thauvin-Robinet, Christel
van Dijk, Erwin L.
Zaafrane-Khachnaoui, Khaoula
Zur, Dinah
Kaplan, Josseline
Rivolta, Carlo
Rozet, Jean Michel
Perrault, Isabelle
author2_role author
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author
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author
author
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author
author
author
author
author
author
author
author
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author
dc.contributor.none.fl_str_mv NOVA Medical School|Faculdade de Ciências Médicas (NMS|FCM)
iNOVA4Health - pólo NMS
RUN
dc.contributor.author.fl_str_mv Zanetti, Andrea
Dujardin, Gwendal
Fares-Taie, Lucas
Amiel, Jeanne
Roger, Jérôme E.
Audo, Isabelle
Robert, Matthieu P.
David, Pierre
Jung, Vincent
Goudin, Nicolas
Guerrera, Ida Chiara
Moriceau, Stéphanie
Amana, Danielle
Assia Batzir, Nurit
Bachar-Zipori, Anat
Basel Salmon, Lina
Boddaert, Nathalie
Briault, Sylvain
Bruel, Ange Line
Costet-Fighiera, Christine
Coutinho Santos, Luisa
Gitiaux, Cyril
Kaminska, Karolina
Kuentz, Paul
Orenstein, Naama
Philip-Sarles, Nicole
Plutino, Morgane
Quinodoz, Mathieu
Santos, Cristina
Sigaudy, Sabine
Soeiro e Sá, Mariana
Sofrin, Efrat
Sousa, Ana Berta
Sousa-Luis, Rui
Thauvin-Robinet, Christel
van Dijk, Erwin L.
Zaafrane-Khachnaoui, Khaoula
Zur, Dinah
Kaplan, Josseline
Rivolta, Carlo
Rozet, Jean Michel
Perrault, Isabelle
dc.subject.por.fl_str_mv Chemistry(all)
Biochemistry, Genetics and Molecular Biology(all)
Physics and Astronomy(all)
topic Chemistry(all)
Biochemistry, Genetics and Molecular Biology(all)
Physics and Astronomy(all)
description 310030_204285s from the Swiss National Science Foundation to C.R. J.M.R. is member of the European Reference Network for Rare Eye Diseases (ERN-EYE), which is co-funded by the Health Program of the European Union under the Framework Partnership Agreement n\u00B0739534. The authors thank the Transgenesis, Neurobehavioral and Metabolism, Necker Bioimage Analysis, Cell Imaging, Histology (Sofian Ameur, Damien Conrozier, and Sophie Berissi), Cytometry, Genomic, and Proteomic platforms for valuable discussions and help. Special thanks go to Nicolas Cagnard for the submission to BioStudies. We acknowledge the sequencing and bioinformatics expertise of the I2BC High-throughput sequencing facility, supported by France G\u00E9nomique (funded by the French National Program \u201CInvestissement d\u2019Avenir\u201D ANR-10-INBS-09. The authors would like to acknowledge all patients and their families for participating in this study. The authors are also grateful to Virginie G. Peter and Raquel Rodriguez for their help throughout the study and to Sitta F\u00F6hr for careful proofreading of the manuscript. This research was made possible through access to the data generated by the France Genomic Medicine Plan 2025 and the authors thank Dr. Marine Lebrun for her help in the genome analysis. Publisher Copyright: © The Author(s) 2024.
publishDate 2024
dc.date.none.fl_str_mv 2024-11-28T23:12:27Z
2024-12
2024-12-01T00:00:00Z
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PURE: 103925969
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