Analysis of pancreas histological images for glucose intolerance identificationusing ImageJ-preliminary results

Bibliographic Details
Main Author: Rato, L.M.
Publication Date: 2013
Other Authors: Capela e Silva, F., Costa, A.R., Antunes, C.M.
Format: Article
Language: eng
Source: Repositórios Científicos de Acesso Aberto de Portugal (RCAAP)
Download full: http://hdl.handle.net/10174/9927
https://doi.org/10.1201/b15810-56
Summary: The observation in microscopy of histological sections allows us to evaluate structural differences, in pancreatic cells, between rats with normal glucose tolerance and with glucose intolerance (pre-diabetic) situation. Nevertheless, this pre-diabetic condition implies subtle changes in islets of Langerhans structure. This and the normal variability among sampled cells makes difficult the task of identifying glucose intolerance (pre-diabetic situation) with a low level of error. This paper presents preliminary results in the processing of histological pancreas images with the goal of identifying pre-diabetic situation in Wistar rats. The immediate goal of this work is to evaluate the performance of a classifier based in a morphometric measurement of the histological images and to assess the potential for image based automatic processing and classification. A set of 90 images, were used (58 from rats with normal glucose tolerance, and 32 from pre-diabetic ones). These images were segmented manually using ImageJ. This segmentation and area measurements have been speedup by the application of ImageJ macros which were defined for this purpose. The ratio, between the area of -cells and the islets of Langerhans , was used has the indicator of the prediabetic situation. Considering this feature, a receiver operating characteristic analysis has been performed. True positive rate, vs. false positive rate shows the predicted performance of a binary classifier as its discrimination threshold is varied.
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spelling Analysis of pancreas histological images for glucose intolerance identificationusing ImageJ-preliminary resultsAnalysis of Histological ImagesPancreasGlucose IntoleranceImageJThe observation in microscopy of histological sections allows us to evaluate structural differences, in pancreatic cells, between rats with normal glucose tolerance and with glucose intolerance (pre-diabetic) situation. Nevertheless, this pre-diabetic condition implies subtle changes in islets of Langerhans structure. This and the normal variability among sampled cells makes difficult the task of identifying glucose intolerance (pre-diabetic situation) with a low level of error. This paper presents preliminary results in the processing of histological pancreas images with the goal of identifying pre-diabetic situation in Wistar rats. The immediate goal of this work is to evaluate the performance of a classifier based in a morphometric measurement of the histological images and to assess the potential for image based automatic processing and classification. A set of 90 images, were used (58 from rats with normal glucose tolerance, and 32 from pre-diabetic ones). These images were segmented manually using ImageJ. This segmentation and area measurements have been speedup by the application of ImageJ macros which were defined for this purpose. The ratio, between the area of -cells and the islets of Langerhans , was used has the indicator of the prediabetic situation. Considering this feature, a receiver operating characteristic analysis has been performed. True positive rate, vs. false positive rate shows the predicted performance of a binary classifier as its discrimination threshold is varied.CRC Press2014-01-23T10:10:11Z2014-01-232013-01-01T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlehttp://hdl.handle.net/10174/9927http://hdl.handle.net/10174/9927https://doi.org/10.1201/b15810-56engRato LM, Capela e Silva F, Costa AR, Antunes CM. (2013) Analysis of pancreas histological images for glucose intolerance identificationusing ImageJ-preliminary results. Computational Vision and Medical Image Processing IV, VIPIMAGE 2013. Edited by João Manuel R. S. Tavares and R.M. Natal Jorge. CRC Press 2013, pp: 319–322.319-322978-1-138-00081-0eBook ISBN 978-1-315-81292-2http://www.crcnetbase.com/doi/abs/10.1201/b15810-56Departamento de Informática, Departamento de Química, ICAAM-Instituto de Ciências Agrárias e Ambientais Mediterrânicaslmr@uevora.ptfcs@uevora.ptacrc@uevora.ptcmma@uevora.pt283Rato, L.M.Capela e Silva, F.Costa, A.R.Antunes, C.M.info:eu-repo/semantics/openAccessreponame:Repositórios Científicos de Acesso Aberto de Portugal (RCAAP)instname:FCCN, serviços digitais da FCT – Fundação para a Ciência e a Tecnologiainstacron:RCAAP2024-01-03T18:52:21Zoai:dspace.uevora.pt:10174/9927Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireinfo@rcaap.ptopendoar:https://opendoar.ac.uk/repository/71602025-05-28T12:00:35.958369Repositórios Científicos de Acesso Aberto de Portugal (RCAAP) - FCCN, serviços digitais da FCT – Fundação para a Ciência e a Tecnologiafalse
dc.title.none.fl_str_mv Analysis of pancreas histological images for glucose intolerance identificationusing ImageJ-preliminary results
title Analysis of pancreas histological images for glucose intolerance identificationusing ImageJ-preliminary results
spellingShingle Analysis of pancreas histological images for glucose intolerance identificationusing ImageJ-preliminary results
Rato, L.M.
Analysis of Histological Images
Pancreas
Glucose Intolerance
ImageJ
title_short Analysis of pancreas histological images for glucose intolerance identificationusing ImageJ-preliminary results
title_full Analysis of pancreas histological images for glucose intolerance identificationusing ImageJ-preliminary results
title_fullStr Analysis of pancreas histological images for glucose intolerance identificationusing ImageJ-preliminary results
title_full_unstemmed Analysis of pancreas histological images for glucose intolerance identificationusing ImageJ-preliminary results
title_sort Analysis of pancreas histological images for glucose intolerance identificationusing ImageJ-preliminary results
author Rato, L.M.
author_facet Rato, L.M.
Capela e Silva, F.
Costa, A.R.
Antunes, C.M.
author_role author
author2 Capela e Silva, F.
Costa, A.R.
Antunes, C.M.
author2_role author
author
author
dc.contributor.author.fl_str_mv Rato, L.M.
Capela e Silva, F.
Costa, A.R.
Antunes, C.M.
dc.subject.por.fl_str_mv Analysis of Histological Images
Pancreas
Glucose Intolerance
ImageJ
topic Analysis of Histological Images
Pancreas
Glucose Intolerance
ImageJ
description The observation in microscopy of histological sections allows us to evaluate structural differences, in pancreatic cells, between rats with normal glucose tolerance and with glucose intolerance (pre-diabetic) situation. Nevertheless, this pre-diabetic condition implies subtle changes in islets of Langerhans structure. This and the normal variability among sampled cells makes difficult the task of identifying glucose intolerance (pre-diabetic situation) with a low level of error. This paper presents preliminary results in the processing of histological pancreas images with the goal of identifying pre-diabetic situation in Wistar rats. The immediate goal of this work is to evaluate the performance of a classifier based in a morphometric measurement of the histological images and to assess the potential for image based automatic processing and classification. A set of 90 images, were used (58 from rats with normal glucose tolerance, and 32 from pre-diabetic ones). These images were segmented manually using ImageJ. This segmentation and area measurements have been speedup by the application of ImageJ macros which were defined for this purpose. The ratio, between the area of -cells and the islets of Langerhans , was used has the indicator of the prediabetic situation. Considering this feature, a receiver operating characteristic analysis has been performed. True positive rate, vs. false positive rate shows the predicted performance of a binary classifier as its discrimination threshold is varied.
publishDate 2013
dc.date.none.fl_str_mv 2013-01-01T00:00:00Z
2014-01-23T10:10:11Z
2014-01-23
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://hdl.handle.net/10174/9927
http://hdl.handle.net/10174/9927
https://doi.org/10.1201/b15810-56
url http://hdl.handle.net/10174/9927
https://doi.org/10.1201/b15810-56
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Rato LM, Capela e Silva F, Costa AR, Antunes CM. (2013) Analysis of pancreas histological images for glucose intolerance identificationusing ImageJ-preliminary results. Computational Vision and Medical Image Processing IV, VIPIMAGE 2013. Edited by João Manuel R. S. Tavares and R.M. Natal Jorge. CRC Press 2013, pp: 319–322.
319-322
978-1-138-00081-0
eBook ISBN 978-1-315-81292-2
http://www.crcnetbase.com/doi/abs/10.1201/b15810-56
Departamento de Informática, Departamento de Química, ICAAM-Instituto de Ciências Agrárias e Ambientais Mediterrânicas
lmr@uevora.pt
fcs@uevora.pt
acrc@uevora.pt
cmma@uevora.pt
283
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.publisher.none.fl_str_mv CRC Press
publisher.none.fl_str_mv CRC Press
dc.source.none.fl_str_mv reponame:Repositórios Científicos de Acesso Aberto de Portugal (RCAAP)
instname:FCCN, serviços digitais da FCT – Fundação para a Ciência e a Tecnologia
instacron:RCAAP
instname_str FCCN, serviços digitais da FCT – Fundação para a Ciência e a Tecnologia
instacron_str RCAAP
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reponame_str Repositórios Científicos de Acesso Aberto de Portugal (RCAAP)
collection Repositórios Científicos de Acesso Aberto de Portugal (RCAAP)
repository.name.fl_str_mv Repositórios Científicos de Acesso Aberto de Portugal (RCAAP) - FCCN, serviços digitais da FCT – Fundação para a Ciência e a Tecnologia
repository.mail.fl_str_mv info@rcaap.pt
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