Software for micromorphometric characterization of soil pores obtained from 2-D image analysis
Main Author: | |
---|---|
Publication Date: | 2016 |
Other Authors: | , , |
Format: | Article |
Language: | eng |
Source: | Scientia Agrícola (Online) |
Download full: | https://revistas.usp.br/sa/article/view/117321 |
Summary: | Studies of soil porosity through image analysis are important to an understanding of how the soil functions. However, the lack of a simplified methodology for the quantification of the shape, number, and size of soil pores has limited the use of information extracted from images. The present work proposes a software program for the quantification and characterization of soil porosity from data derived from 2-D images. The user-friendly software was developed in C++ and allows for the classification of pores in terms of size, shape, and combinations of size and shape. Using raw data generated by image analysis systems, the software calculates the following parameters for the characterization of soil porosity: total area of pore (Tap), number of pores, pore shape, pore shape and pore area, and pore shape and equivalent pore diameter (EqDiam). In this paper, the input file with the raw soil porosity data was generated using the Noesis Visilog 5.4 image analysis system; however other image analysis programs can be used, in which case, the input file requires a standard format to permit processing by this software. The software also shows the descriptive statistics (mean, standard deviation, variance, and the coefficient of variation) of the parameters considering the total number of images evaluated. The results show that the software is a complementary tool to any analysis of soil porosity, allowing for a precise and quick analysis. |
id |
USP-18_2e46d9c98743d08e166b469e2ac6c2a9 |
---|---|
oai_identifier_str |
oai:revistas.usp.br:article/117321 |
network_acronym_str |
USP-18 |
network_name_str |
Scientia Agrícola (Online) |
repository_id_str |
|
spelling |
Software for micromorphometric characterization of soil pores obtained from 2-D image analysis Studies of soil porosity through image analysis are important to an understanding of how the soil functions. However, the lack of a simplified methodology for the quantification of the shape, number, and size of soil pores has limited the use of information extracted from images. The present work proposes a software program for the quantification and characterization of soil porosity from data derived from 2-D images. The user-friendly software was developed in C++ and allows for the classification of pores in terms of size, shape, and combinations of size and shape. Using raw data generated by image analysis systems, the software calculates the following parameters for the characterization of soil porosity: total area of pore (Tap), number of pores, pore shape, pore shape and pore area, and pore shape and equivalent pore diameter (EqDiam). In this paper, the input file with the raw soil porosity data was generated using the Noesis Visilog 5.4 image analysis system; however other image analysis programs can be used, in which case, the input file requires a standard format to permit processing by this software. The software also shows the descriptive statistics (mean, standard deviation, variance, and the coefficient of variation) of the parameters considering the total number of images evaluated. The results show that the software is a complementary tool to any analysis of soil porosity, allowing for a precise and quick analysis. Universidade de São Paulo. Escola Superior de Agricultura Luiz de Queiroz2016-08-01info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionapplication/pdfhttps://revistas.usp.br/sa/article/view/11732110.1590/0103-9016-2015-0053Scientia Agricola; v. 73 n. 4 (2016); 388-393Scientia Agricola; Vol. 73 Núm. 4 (2016); 388-393Scientia Agricola; Vol. 73 No. 4 (2016); 388-3931678-992X0103-9016reponame:Scientia Agrícola (Online)instname:Universidade de São Paulo (USP)instacron:USPenghttps://revistas.usp.br/sa/article/view/117321/114963Copyright (c) 2016 Scientia Agricolainfo:eu-repo/semantics/openAccessCooper, MiguelBoschi, Raquel StucchiSilva, Vitor Boschi daSilva, Laura Fernanda Simões da2016-07-05T13:48:55Zoai:revistas.usp.br:article/117321Revistahttp://revistas.usp.br/sa/indexPUBhttps://old.scielo.br/oai/scielo-oai.phpscientia@usp.br||alleoni@usp.br1678-992X0103-9016opendoar:2016-07-05T13:48:55Scientia Agrícola (Online) - Universidade de São Paulo (USP)false |
dc.title.none.fl_str_mv |
Software for micromorphometric characterization of soil pores obtained from 2-D image analysis |
title |
Software for micromorphometric characterization of soil pores obtained from 2-D image analysis |
spellingShingle |
Software for micromorphometric characterization of soil pores obtained from 2-D image analysis Cooper, Miguel |
title_short |
Software for micromorphometric characterization of soil pores obtained from 2-D image analysis |
title_full |
Software for micromorphometric characterization of soil pores obtained from 2-D image analysis |
title_fullStr |
Software for micromorphometric characterization of soil pores obtained from 2-D image analysis |
title_full_unstemmed |
Software for micromorphometric characterization of soil pores obtained from 2-D image analysis |
title_sort |
Software for micromorphometric characterization of soil pores obtained from 2-D image analysis |
author |
Cooper, Miguel |
author_facet |
Cooper, Miguel Boschi, Raquel Stucchi Silva, Vitor Boschi da Silva, Laura Fernanda Simões da |
author_role |
author |
author2 |
Boschi, Raquel Stucchi Silva, Vitor Boschi da Silva, Laura Fernanda Simões da |
author2_role |
author author author |
dc.contributor.author.fl_str_mv |
Cooper, Miguel Boschi, Raquel Stucchi Silva, Vitor Boschi da Silva, Laura Fernanda Simões da |
description |
Studies of soil porosity through image analysis are important to an understanding of how the soil functions. However, the lack of a simplified methodology for the quantification of the shape, number, and size of soil pores has limited the use of information extracted from images. The present work proposes a software program for the quantification and characterization of soil porosity from data derived from 2-D images. The user-friendly software was developed in C++ and allows for the classification of pores in terms of size, shape, and combinations of size and shape. Using raw data generated by image analysis systems, the software calculates the following parameters for the characterization of soil porosity: total area of pore (Tap), number of pores, pore shape, pore shape and pore area, and pore shape and equivalent pore diameter (EqDiam). In this paper, the input file with the raw soil porosity data was generated using the Noesis Visilog 5.4 image analysis system; however other image analysis programs can be used, in which case, the input file requires a standard format to permit processing by this software. The software also shows the descriptive statistics (mean, standard deviation, variance, and the coefficient of variation) of the parameters considering the total number of images evaluated. The results show that the software is a complementary tool to any analysis of soil porosity, allowing for a precise and quick analysis. |
publishDate |
2016 |
dc.date.none.fl_str_mv |
2016-08-01 |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article info:eu-repo/semantics/publishedVersion |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
https://revistas.usp.br/sa/article/view/117321 10.1590/0103-9016-2015-0053 |
url |
https://revistas.usp.br/sa/article/view/117321 |
identifier_str_mv |
10.1590/0103-9016-2015-0053 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
https://revistas.usp.br/sa/article/view/117321/114963 |
dc.rights.driver.fl_str_mv |
Copyright (c) 2016 Scientia Agricola info:eu-repo/semantics/openAccess |
rights_invalid_str_mv |
Copyright (c) 2016 Scientia Agricola |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
application/pdf |
dc.publisher.none.fl_str_mv |
Universidade de São Paulo. Escola Superior de Agricultura Luiz de Queiroz |
publisher.none.fl_str_mv |
Universidade de São Paulo. Escola Superior de Agricultura Luiz de Queiroz |
dc.source.none.fl_str_mv |
Scientia Agricola; v. 73 n. 4 (2016); 388-393 Scientia Agricola; Vol. 73 Núm. 4 (2016); 388-393 Scientia Agricola; Vol. 73 No. 4 (2016); 388-393 1678-992X 0103-9016 reponame:Scientia Agrícola (Online) instname:Universidade de São Paulo (USP) instacron:USP |
instname_str |
Universidade de São Paulo (USP) |
instacron_str |
USP |
institution |
USP |
reponame_str |
Scientia Agrícola (Online) |
collection |
Scientia Agrícola (Online) |
repository.name.fl_str_mv |
Scientia Agrícola (Online) - Universidade de São Paulo (USP) |
repository.mail.fl_str_mv |
scientia@usp.br||alleoni@usp.br |
_version_ |
1839537132395298816 |