DNA barcode shows discordant cases among morphological and molecular species identification in Isbrueckerichthys (Siluriformes: Loricariidae)

Bibliographic Details
Main Author: de Almeida, Rafael B.
Publication Date: 2024
Other Authors: Azambuja, Matheus, Nogaroto, Viviane, Oliveira, Claudio [UNESP], Roxo, Fábio F. [UNESP], Zawadzki, Cláudio H., Vicari, Marcelo R.
Format: Article
Language: eng
Source: Repositório Institucional da UNESP
Download full: http://dx.doi.org/10.1590/1982-0224-2024-0040
https://hdl.handle.net/11449/301217
Summary: Isbrueckerichthys is a genus of armored catfish (Siluriformes: Loricariidae) with five species in the lowlands from the Ribeira de Iguape basin and in the uplands of the Tibagi River basin. Despite the validation of the morphological species, molecular data to investigate gene flow and species delimitation have not been completed for all species. For this purpose, we compared sequences of COI region associated with barcoding molecular identification, aiming for a species delimitation analysis and generating population data of I. alipionis, I. epakmos, I. duseni, I. cf. duseni, I. saxicola, and I. calvus. The K2P genetic distance, molecular species delimitation analysis, and well-sustained branches in the phylogenetic tree validate I. alipionis, I. epakmos, and I. duseni, and suggest I. cf. duseni as a valid molecular operational taxonomic unit. However, no differences were detected between I. saxicola and I. calvus. The discordance between molecular and morphological species may be due to the recent dispersal of some Isbrueckerichthys representatives at the border between the Ribeira de Iguape and Tibagi basins. The isolation features of the mountainous region of Ribeira de Iguape basin and headwaters captures to uplands are presented to explain the dispersion and the cases of incipient speciation in Isbrueckerichthys lineages.
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spelling DNA barcode shows discordant cases among morphological and molecular species identification in Isbrueckerichthys (Siluriformes: Loricariidae)Incipient speciationIntegrative taxonomyMolecular operational taxonomic unitsMolecular species delimitationSystematicsIsbrueckerichthys is a genus of armored catfish (Siluriformes: Loricariidae) with five species in the lowlands from the Ribeira de Iguape basin and in the uplands of the Tibagi River basin. Despite the validation of the morphological species, molecular data to investigate gene flow and species delimitation have not been completed for all species. For this purpose, we compared sequences of COI region associated with barcoding molecular identification, aiming for a species delimitation analysis and generating population data of I. alipionis, I. epakmos, I. duseni, I. cf. duseni, I. saxicola, and I. calvus. The K2P genetic distance, molecular species delimitation analysis, and well-sustained branches in the phylogenetic tree validate I. alipionis, I. epakmos, and I. duseni, and suggest I. cf. duseni as a valid molecular operational taxonomic unit. However, no differences were detected between I. saxicola and I. calvus. The discordance between molecular and morphological species may be due to the recent dispersal of some Isbrueckerichthys representatives at the border between the Ribeira de Iguape and Tibagi basins. The isolation features of the mountainous region of Ribeira de Iguape basin and headwaters captures to uplands are presented to explain the dispersion and the cases of incipient speciation in Isbrueckerichthys lineages.Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)Programa de Pós-Graduação em Genética Universidade Federal do Paraná Centro Politécnico, Jardim das Américas, PRDepartamento de Biologia Estrutural Molecular e Genética Universidade Estadual de Ponta Grossa, Av. Carlos Cavalcanti, 4748, PRLaboratório de Biologia e Genética de Peixes Departamento de Biologia Estrutural e Funcional Instituto de Biociências de Botucatu Universidade Estadual Paulista, R. Prof. Dr. Antônio C. W. Zanin, s/n, Rubião Jr., SPNúcleo de Pesquisas em Limnologia Ictiologia e Aquicultura (Nupélia) Departamento de Biologia Universidade Estadual de Maringá, Av. Colombo, 5790, PRLaboratório de Biologia e Genética de Peixes Departamento de Biologia Estrutural e Funcional Instituto de Biociências de Botucatu Universidade Estadual Paulista, R. Prof. Dr. Antônio C. W. Zanin, s/n, Rubião Jr., SPCAPES: 001FAPESP: 2020/13433–6CNPq: 306054/2006–0CNPq: 313566/2023–2CNPq: 441128/2020–3Universidade Federal do Paraná (UFPR)Universidade Estadual de Ponta Grossa (UEPG)Universidade Estadual Paulista (UNESP)Universidade Estadual de Maringá (UEM)de Almeida, Rafael B.Azambuja, MatheusNogaroto, VivianeOliveira, Claudio [UNESP]Roxo, Fábio F. [UNESP]Zawadzki, Cláudio H.Vicari, Marcelo R.2025-04-29T18:57:32Z2024-01-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlehttp://dx.doi.org/10.1590/1982-0224-2024-0040Neotropical Ichthyology, v. 22, n. 3, 2024.1982-02241679-6225https://hdl.handle.net/11449/30121710.1590/1982-0224-2024-00402-s2.0-85208413075Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengNeotropical Ichthyologyinfo:eu-repo/semantics/openAccess2025-04-30T13:36:40Zoai:repositorio.unesp.br:11449/301217Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestrepositoriounesp@unesp.bropendoar:29462025-04-30T13:36:40Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv DNA barcode shows discordant cases among morphological and molecular species identification in Isbrueckerichthys (Siluriformes: Loricariidae)
title DNA barcode shows discordant cases among morphological and molecular species identification in Isbrueckerichthys (Siluriformes: Loricariidae)
spellingShingle DNA barcode shows discordant cases among morphological and molecular species identification in Isbrueckerichthys (Siluriformes: Loricariidae)
de Almeida, Rafael B.
Incipient speciation
Integrative taxonomy
Molecular operational taxonomic units
Molecular species delimitation
Systematics
title_short DNA barcode shows discordant cases among morphological and molecular species identification in Isbrueckerichthys (Siluriformes: Loricariidae)
title_full DNA barcode shows discordant cases among morphological and molecular species identification in Isbrueckerichthys (Siluriformes: Loricariidae)
title_fullStr DNA barcode shows discordant cases among morphological and molecular species identification in Isbrueckerichthys (Siluriformes: Loricariidae)
title_full_unstemmed DNA barcode shows discordant cases among morphological and molecular species identification in Isbrueckerichthys (Siluriformes: Loricariidae)
title_sort DNA barcode shows discordant cases among morphological and molecular species identification in Isbrueckerichthys (Siluriformes: Loricariidae)
author de Almeida, Rafael B.
author_facet de Almeida, Rafael B.
Azambuja, Matheus
Nogaroto, Viviane
Oliveira, Claudio [UNESP]
Roxo, Fábio F. [UNESP]
Zawadzki, Cláudio H.
Vicari, Marcelo R.
author_role author
author2 Azambuja, Matheus
Nogaroto, Viviane
Oliveira, Claudio [UNESP]
Roxo, Fábio F. [UNESP]
Zawadzki, Cláudio H.
Vicari, Marcelo R.
author2_role author
author
author
author
author
author
dc.contributor.none.fl_str_mv Universidade Federal do Paraná (UFPR)
Universidade Estadual de Ponta Grossa (UEPG)
Universidade Estadual Paulista (UNESP)
Universidade Estadual de Maringá (UEM)
dc.contributor.author.fl_str_mv de Almeida, Rafael B.
Azambuja, Matheus
Nogaroto, Viviane
Oliveira, Claudio [UNESP]
Roxo, Fábio F. [UNESP]
Zawadzki, Cláudio H.
Vicari, Marcelo R.
dc.subject.por.fl_str_mv Incipient speciation
Integrative taxonomy
Molecular operational taxonomic units
Molecular species delimitation
Systematics
topic Incipient speciation
Integrative taxonomy
Molecular operational taxonomic units
Molecular species delimitation
Systematics
description Isbrueckerichthys is a genus of armored catfish (Siluriformes: Loricariidae) with five species in the lowlands from the Ribeira de Iguape basin and in the uplands of the Tibagi River basin. Despite the validation of the morphological species, molecular data to investigate gene flow and species delimitation have not been completed for all species. For this purpose, we compared sequences of COI region associated with barcoding molecular identification, aiming for a species delimitation analysis and generating population data of I. alipionis, I. epakmos, I. duseni, I. cf. duseni, I. saxicola, and I. calvus. The K2P genetic distance, molecular species delimitation analysis, and well-sustained branches in the phylogenetic tree validate I. alipionis, I. epakmos, and I. duseni, and suggest I. cf. duseni as a valid molecular operational taxonomic unit. However, no differences were detected between I. saxicola and I. calvus. The discordance between molecular and morphological species may be due to the recent dispersal of some Isbrueckerichthys representatives at the border between the Ribeira de Iguape and Tibagi basins. The isolation features of the mountainous region of Ribeira de Iguape basin and headwaters captures to uplands are presented to explain the dispersion and the cases of incipient speciation in Isbrueckerichthys lineages.
publishDate 2024
dc.date.none.fl_str_mv 2024-01-01
2025-04-29T18:57:32Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.1590/1982-0224-2024-0040
Neotropical Ichthyology, v. 22, n. 3, 2024.
1982-0224
1679-6225
https://hdl.handle.net/11449/301217
10.1590/1982-0224-2024-0040
2-s2.0-85208413075
url http://dx.doi.org/10.1590/1982-0224-2024-0040
https://hdl.handle.net/11449/301217
identifier_str_mv Neotropical Ichthyology, v. 22, n. 3, 2024.
1982-0224
1679-6225
10.1590/1982-0224-2024-0040
2-s2.0-85208413075
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Neotropical Ichthyology
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.source.none.fl_str_mv Scopus
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
repository.mail.fl_str_mv repositoriounesp@unesp.br
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