Machine Learning-based Prediction Model for Treatment of Acromegaly with First-generation Somatostatin Receptor Ligands
Autor(a) principal: | |
---|---|
Data de Publicação: | 2021 |
Outros Autores: | , , , , , , , , , , , , , , , , , , , , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da UNESP |
Texto Completo: | http://dx.doi.org/10.1210/clinem/dgab125 http://hdl.handle.net/11449/229017 |
Resumo: | Context: Artificial intelligence (AI), in particular machine learning (ML), may be used to deeply analyze biomarkers of response to first-generation somatostatin receptor ligands (fg-SRLs) in the treatment of acromegaly. Objective: To develop a prediction model of therapeutic response of acromegaly to fg-SRL. Methods: Patients with acromegaly not cured by primary surgical treatment and who had adjuvant therapy with fg-SRL for at least 6 months after surgery were included. Patients were considered controlled if they presented growth hormone (GH) <1.0 ng/mL and normal age-adjusted insulin-like growth factor (IGF)-I levels. Six AI models were evaluated: logistic regression, k-nearest neighbor classifier, support vector machine, gradient-boosted classifier, random forest, and multilayer perceptron. The features included in the analysis were age at diagnosis, sex, GH, and IGF-I levels at diagnosis and at pretreatment, somatostatin receptor subtype 2 and 5 (SST2 and SST5) protein expression and cytokeratin granulation pattern (GP). Results: A total of 153 patients were analyzed. Controlled patients were older (P=.002), had lower GH at diagnosis (P=.01), had lower pretreatment GH and IGF-I (P<.001), and more frequently harbored tumors that were densely granulated (P=.014) or highly expressed SST2 (P<.001). The model that performed best was the support vector machine with the features SST2, SST5, GP, sex, age, and pretreatment GH and IGF-I levels. It had an accuracy of 86.3%, positive predictive value of 83.3% and negative predictive value of 87.5%. Conclusion: We developed a ML-based prediction model with high accuracy that has the potential to improve medical management of acromegaly, optimize biochemical control, decrease long-term morbidities and mortality, and reduce health services costs. |
id |
UNSP_e8f29dc64d7b99579e6ce800c93e89d8 |
---|---|
oai_identifier_str |
oai:repositorio.unesp.br:11449/229017 |
network_acronym_str |
UNSP |
network_name_str |
Repositório Institucional da UNESP |
repository_id_str |
2946 |
spelling |
Machine Learning-based Prediction Model for Treatment of Acromegaly with First-generation Somatostatin Receptor Ligandsacromegalybiomarkermachine learningprecision medicineprediction modelsomatostatin receptorsomatostatin receptor ligandsContext: Artificial intelligence (AI), in particular machine learning (ML), may be used to deeply analyze biomarkers of response to first-generation somatostatin receptor ligands (fg-SRLs) in the treatment of acromegaly. Objective: To develop a prediction model of therapeutic response of acromegaly to fg-SRL. Methods: Patients with acromegaly not cured by primary surgical treatment and who had adjuvant therapy with fg-SRL for at least 6 months after surgery were included. Patients were considered controlled if they presented growth hormone (GH) <1.0 ng/mL and normal age-adjusted insulin-like growth factor (IGF)-I levels. Six AI models were evaluated: logistic regression, k-nearest neighbor classifier, support vector machine, gradient-boosted classifier, random forest, and multilayer perceptron. The features included in the analysis were age at diagnosis, sex, GH, and IGF-I levels at diagnosis and at pretreatment, somatostatin receptor subtype 2 and 5 (SST2 and SST5) protein expression and cytokeratin granulation pattern (GP). Results: A total of 153 patients were analyzed. Controlled patients were older (P=.002), had lower GH at diagnosis (P=.01), had lower pretreatment GH and IGF-I (P<.001), and more frequently harbored tumors that were densely granulated (P=.014) or highly expressed SST2 (P<.001). The model that performed best was the support vector machine with the features SST2, SST5, GP, sex, age, and pretreatment GH and IGF-I levels. It had an accuracy of 86.3%, positive predictive value of 83.3% and negative predictive value of 87.5%. Conclusion: We developed a ML-based prediction model with high accuracy that has the potential to improve medical management of acromegaly, optimize biochemical control, decrease long-term morbidities and mortality, and reduce health services costs.Endocrine Unit and Neuroendocrinology Research Center Med. Sch. and Hospital Universitario Clementino Fraga Filho - Universidade Federal Do Rio de Janeiro, RJNeuroendocrine Unit - Instituto Estadual Do Cérebro Paulo Niemeyer Secretaria Estadual de Saúde, RJNeuropathology and Molecular Genetics Laboratory Instituto Estadual Do Cérebro Paulo Niemeyer Secretaria Estadual de Saúde, RJDivision of Endocrinology - Department of Internal Medicine Ribeirao Preto Medical School - University of Sao Paulo, SPNeuroendocrine Unit Division of Functional Neurosurgery Hospital das Clinicas Faculdade de Medicina Universidade de São Paulo, SPNeuroendocrine U. - Div. of Endocrinol. and Metab. - Esc. Paulista de Med. - Univ. Fed. de Sao Paulo, SPNeuroendocrine Unit Division of Endocrinology and Metabolism Hospital das Clínicas University of São Paulo Medical School, SPCellular and Molecular Endocrinology Laboratory/LIM25 Discipline of Endocrinology Hospital das Clinicas HCFMUSP Faculty of Medicine University of Sao Paulo, SPNeuroendocrinology and Neurosurgery Unit Hospital Brigadeiro, SPEndocrinology and Metabolism Unit Hospital Geral de Fortaleza Secretaria Estadual de Saúde, CEDivision of Endocrinology Hospital de Clinicas de Porto Alegre (UFRGS), RS,AlegreInstitute of Medical Assistance to the State Public HospitalFaculdade de Medicina Universidade Federal de Minas Gerais, MGNeuroendocrine Unit Division of Endocrinology and Metabolism Hospital das Clínicas Federal University of Pernambuco Medical School, PEEndocrine Division (SEMPR) Department of Internal Medicine Universidade Federal Do Parana, PREndocrine Unit - Department of Internal Medicine Faculty of Medical Sciences Universidade Do Estado Do Rio de JaneiroDepartment of Internal Medicine São Paulo State University/UNESP Medical School, SPDivision of Endocrinology of Medical Clinical Department Universidade Estadual de Londrina (UEL), PRSanta Casa de Porto Alegre, RSDepartment of Internal Medicine São Paulo State University/UNESP Medical School, SPUniversidade Federal do Rio de Janeiro (UFRJ)Secretaria Estadual de SaúdeUniversidade de São Paulo (USP)Universidade Federal de São Paulo (UNIFESP)Neuroendocrinology and Neurosurgery Unit Hospital BrigadeiroHospital de Clinicas de Porto Alegre (UFRGS)Institute of Medical Assistance to the State Public HospitalUniversidade Federal de Minas Gerais (UFMG)Universidade Federal de Pernambuco (UFPE)Universidade Federal Do ParanaUniversidade do Estado do Rio de Janeiro (UERJ)Universidade Estadual Paulista (UNESP)Universidade Estadual de Londrina (UEL)Santa Casa de Porto AlegreWildemberg, Luiz EduardoDa Silva Camacho, Aline HelenMiranda, Renan LyraElias, Paula C. LDe Castro Musolino, Nina RNazato, DeboraJallad, RaquelHuayllas, Martha K. PMota, Jose Italo SAlmeida, TobiasPortes, EvandroRibeiro-Oliveira, AntonioVilar, LucioBoguszewski, Cesar LuizWinter Tavares, Ana BeatrizNunes-Nogueira, Vania S [UNESP]Mazzuco, Tânia LongoRech, Carolina Garcia Soares LeãesMarques, Nelma VeronicaChimelli, LeilaCzepielewski, MauroBronstein, Marcello DAbucham, JulioDe Castro, MargaretKasuki, LeandroGadelha, Mônica2022-04-29T08:29:59Z2022-04-29T08:29:59Z2021-07-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article2047-2056http://dx.doi.org/10.1210/clinem/dgab125Journal of Clinical Endocrinology and Metabolism, v. 106, n. 7, p. 2047-2056, 2021.1945-71970021-972Xhttp://hdl.handle.net/11449/22901710.1210/clinem/dgab1252-s2.0-85108385985Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengJournal of Clinical Endocrinology and Metabolisminfo:eu-repo/semantics/openAccess2024-08-14T17:36:31Zoai:repositorio.unesp.br:11449/229017Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestrepositoriounesp@unesp.bropendoar:29462024-08-14T17:36:31Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false |
dc.title.none.fl_str_mv |
Machine Learning-based Prediction Model for Treatment of Acromegaly with First-generation Somatostatin Receptor Ligands |
title |
Machine Learning-based Prediction Model for Treatment of Acromegaly with First-generation Somatostatin Receptor Ligands |
spellingShingle |
Machine Learning-based Prediction Model for Treatment of Acromegaly with First-generation Somatostatin Receptor Ligands Wildemberg, Luiz Eduardo acromegaly biomarker machine learning precision medicine prediction model somatostatin receptor somatostatin receptor ligands |
title_short |
Machine Learning-based Prediction Model for Treatment of Acromegaly with First-generation Somatostatin Receptor Ligands |
title_full |
Machine Learning-based Prediction Model for Treatment of Acromegaly with First-generation Somatostatin Receptor Ligands |
title_fullStr |
Machine Learning-based Prediction Model for Treatment of Acromegaly with First-generation Somatostatin Receptor Ligands |
title_full_unstemmed |
Machine Learning-based Prediction Model for Treatment of Acromegaly with First-generation Somatostatin Receptor Ligands |
title_sort |
Machine Learning-based Prediction Model for Treatment of Acromegaly with First-generation Somatostatin Receptor Ligands |
author |
Wildemberg, Luiz Eduardo |
author_facet |
Wildemberg, Luiz Eduardo Da Silva Camacho, Aline Helen Miranda, Renan Lyra Elias, Paula C. L De Castro Musolino, Nina R Nazato, Debora Jallad, Raquel Huayllas, Martha K. P Mota, Jose Italo S Almeida, Tobias Portes, Evandro Ribeiro-Oliveira, Antonio Vilar, Lucio Boguszewski, Cesar Luiz Winter Tavares, Ana Beatriz Nunes-Nogueira, Vania S [UNESP] Mazzuco, Tânia Longo Rech, Carolina Garcia Soares Leães Marques, Nelma Veronica Chimelli, Leila Czepielewski, Mauro Bronstein, Marcello D Abucham, Julio De Castro, Margaret Kasuki, Leandro Gadelha, Mônica |
author_role |
author |
author2 |
Da Silva Camacho, Aline Helen Miranda, Renan Lyra Elias, Paula C. L De Castro Musolino, Nina R Nazato, Debora Jallad, Raquel Huayllas, Martha K. P Mota, Jose Italo S Almeida, Tobias Portes, Evandro Ribeiro-Oliveira, Antonio Vilar, Lucio Boguszewski, Cesar Luiz Winter Tavares, Ana Beatriz Nunes-Nogueira, Vania S [UNESP] Mazzuco, Tânia Longo Rech, Carolina Garcia Soares Leães Marques, Nelma Veronica Chimelli, Leila Czepielewski, Mauro Bronstein, Marcello D Abucham, Julio De Castro, Margaret Kasuki, Leandro Gadelha, Mônica |
author2_role |
author author author author author author author author author author author author author author author author author author author author author author author author author |
dc.contributor.none.fl_str_mv |
Universidade Federal do Rio de Janeiro (UFRJ) Secretaria Estadual de Saúde Universidade de São Paulo (USP) Universidade Federal de São Paulo (UNIFESP) Neuroendocrinology and Neurosurgery Unit Hospital Brigadeiro Hospital de Clinicas de Porto Alegre (UFRGS) Institute of Medical Assistance to the State Public Hospital Universidade Federal de Minas Gerais (UFMG) Universidade Federal de Pernambuco (UFPE) Universidade Federal Do Parana Universidade do Estado do Rio de Janeiro (UERJ) Universidade Estadual Paulista (UNESP) Universidade Estadual de Londrina (UEL) Santa Casa de Porto Alegre |
dc.contributor.author.fl_str_mv |
Wildemberg, Luiz Eduardo Da Silva Camacho, Aline Helen Miranda, Renan Lyra Elias, Paula C. L De Castro Musolino, Nina R Nazato, Debora Jallad, Raquel Huayllas, Martha K. P Mota, Jose Italo S Almeida, Tobias Portes, Evandro Ribeiro-Oliveira, Antonio Vilar, Lucio Boguszewski, Cesar Luiz Winter Tavares, Ana Beatriz Nunes-Nogueira, Vania S [UNESP] Mazzuco, Tânia Longo Rech, Carolina Garcia Soares Leães Marques, Nelma Veronica Chimelli, Leila Czepielewski, Mauro Bronstein, Marcello D Abucham, Julio De Castro, Margaret Kasuki, Leandro Gadelha, Mônica |
dc.subject.por.fl_str_mv |
acromegaly biomarker machine learning precision medicine prediction model somatostatin receptor somatostatin receptor ligands |
topic |
acromegaly biomarker machine learning precision medicine prediction model somatostatin receptor somatostatin receptor ligands |
description |
Context: Artificial intelligence (AI), in particular machine learning (ML), may be used to deeply analyze biomarkers of response to first-generation somatostatin receptor ligands (fg-SRLs) in the treatment of acromegaly. Objective: To develop a prediction model of therapeutic response of acromegaly to fg-SRL. Methods: Patients with acromegaly not cured by primary surgical treatment and who had adjuvant therapy with fg-SRL for at least 6 months after surgery were included. Patients were considered controlled if they presented growth hormone (GH) <1.0 ng/mL and normal age-adjusted insulin-like growth factor (IGF)-I levels. Six AI models were evaluated: logistic regression, k-nearest neighbor classifier, support vector machine, gradient-boosted classifier, random forest, and multilayer perceptron. The features included in the analysis were age at diagnosis, sex, GH, and IGF-I levels at diagnosis and at pretreatment, somatostatin receptor subtype 2 and 5 (SST2 and SST5) protein expression and cytokeratin granulation pattern (GP). Results: A total of 153 patients were analyzed. Controlled patients were older (P=.002), had lower GH at diagnosis (P=.01), had lower pretreatment GH and IGF-I (P<.001), and more frequently harbored tumors that were densely granulated (P=.014) or highly expressed SST2 (P<.001). The model that performed best was the support vector machine with the features SST2, SST5, GP, sex, age, and pretreatment GH and IGF-I levels. It had an accuracy of 86.3%, positive predictive value of 83.3% and negative predictive value of 87.5%. Conclusion: We developed a ML-based prediction model with high accuracy that has the potential to improve medical management of acromegaly, optimize biochemical control, decrease long-term morbidities and mortality, and reduce health services costs. |
publishDate |
2021 |
dc.date.none.fl_str_mv |
2021-07-01 2022-04-29T08:29:59Z 2022-04-29T08:29:59Z |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://dx.doi.org/10.1210/clinem/dgab125 Journal of Clinical Endocrinology and Metabolism, v. 106, n. 7, p. 2047-2056, 2021. 1945-7197 0021-972X http://hdl.handle.net/11449/229017 10.1210/clinem/dgab125 2-s2.0-85108385985 |
url |
http://dx.doi.org/10.1210/clinem/dgab125 http://hdl.handle.net/11449/229017 |
identifier_str_mv |
Journal of Clinical Endocrinology and Metabolism, v. 106, n. 7, p. 2047-2056, 2021. 1945-7197 0021-972X 10.1210/clinem/dgab125 2-s2.0-85108385985 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
Journal of Clinical Endocrinology and Metabolism |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
2047-2056 |
dc.source.none.fl_str_mv |
Scopus reponame:Repositório Institucional da UNESP instname:Universidade Estadual Paulista (UNESP) instacron:UNESP |
instname_str |
Universidade Estadual Paulista (UNESP) |
instacron_str |
UNESP |
institution |
UNESP |
reponame_str |
Repositório Institucional da UNESP |
collection |
Repositório Institucional da UNESP |
repository.name.fl_str_mv |
Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP) |
repository.mail.fl_str_mv |
repositoriounesp@unesp.br |
_version_ |
1834484672625639424 |