Capacitive DNA Detection Driven by Electronic Charge Fluctuations in a Graphene Nanopore

Detalhes bibliográficos
Autor(a) principal: Feliciano, Gustavo T. [UNESP]
Data de Publicação: 2015
Outros Autores: Sanz-Navarro, Carlos, Coutinho-Neto, Mauricio Domingues, Ordejón, Pablo, Scheicher, Ralph H., Rocha, Alexandre Reily [UNESP]
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.1103/PhysRevApplied.3.034003
http://hdl.handle.net/11449/172101
Resumo: The advent of parallelized automated methods for rapid whole-genome analysis has led to an exponential drop in costs, thus greatly accelerating biomedical research and discovery. Third-generation sequencing techniques, which would utilize the characteristic electrical conductance of the four different nucleotides, could facilitate longer base read lengths and an even lower price per genome. In this work, we propose and apply a quantum-classical hybrid methodology to quantitatively determine the influence of the solvent on the dynamics of DNA and the resulting electron transport properties of a prototypic sequencing device utilizing a graphene nanopore through which the nucleic-acid chain is threaded. Our results show that charge fluctuations in the nucleotides are responsible for characteristic conductance modulations in this system, which can be regarded as a field-effect transistor tuned by the dynamic aqueous environment.
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spelling Capacitive DNA Detection Driven by Electronic Charge Fluctuations in a Graphene NanoporeThe advent of parallelized automated methods for rapid whole-genome analysis has led to an exponential drop in costs, thus greatly accelerating biomedical research and discovery. Third-generation sequencing techniques, which would utilize the characteristic electrical conductance of the four different nucleotides, could facilitate longer base read lengths and an even lower price per genome. In this work, we propose and apply a quantum-classical hybrid methodology to quantitatively determine the influence of the solvent on the dynamics of DNA and the resulting electron transport properties of a prototypic sequencing device utilizing a graphene nanopore through which the nucleic-acid chain is threaded. Our results show that charge fluctuations in the nucleotides are responsible for characteristic conductance modulations in this system, which can be regarded as a field-effect transistor tuned by the dynamic aqueous environment.Departamento de Físico Química Instituto de Química Universidade Estadual Paulista (UNESP)Centro de Ciências Naturais e Humanas Universidade Federal Do ABCICN2-Institut Català de Nanociència i Nanotecnologia Campus UABCSIC-Consejo Superior de Investigaciones Científicas ICN2 BuildingDepartment of Physics and Astronomy Division of Materials Theory Uppsala UniversityInstituto de Física Teórica Universidade Estadual Paulista (UNESP)Departamento de Físico Química Instituto de Química Universidade Estadual Paulista (UNESP)Instituto de Física Teórica Universidade Estadual Paulista (UNESP)Universidade Estadual Paulista (Unesp)Universidade Federal do ABC (UFABC)ICN2-Institut Català de Nanociència i NanotecnologiaICN2 BuildingUppsala UniversityFeliciano, Gustavo T. [UNESP]Sanz-Navarro, CarlosCoutinho-Neto, Mauricio DominguesOrdejón, PabloScheicher, Ralph H.Rocha, Alexandre Reily [UNESP]2018-12-11T16:58:40Z2018-12-11T16:58:40Z2015-03-09info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlehttp://dx.doi.org/10.1103/PhysRevApplied.3.034003Physical Review Applied, v. 3, n. 3, 2015.2331-7019http://hdl.handle.net/11449/17210110.1103/PhysRevApplied.3.0340032-s2.0-84942354270Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengPhysical Review Applied2,089info:eu-repo/semantics/openAccess2024-12-03T15:32:59Zoai:repositorio.unesp.br:11449/172101Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestrepositoriounesp@unesp.bropendoar:29462024-12-03T15:32:59Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Capacitive DNA Detection Driven by Electronic Charge Fluctuations in a Graphene Nanopore
title Capacitive DNA Detection Driven by Electronic Charge Fluctuations in a Graphene Nanopore
spellingShingle Capacitive DNA Detection Driven by Electronic Charge Fluctuations in a Graphene Nanopore
Feliciano, Gustavo T. [UNESP]
title_short Capacitive DNA Detection Driven by Electronic Charge Fluctuations in a Graphene Nanopore
title_full Capacitive DNA Detection Driven by Electronic Charge Fluctuations in a Graphene Nanopore
title_fullStr Capacitive DNA Detection Driven by Electronic Charge Fluctuations in a Graphene Nanopore
title_full_unstemmed Capacitive DNA Detection Driven by Electronic Charge Fluctuations in a Graphene Nanopore
title_sort Capacitive DNA Detection Driven by Electronic Charge Fluctuations in a Graphene Nanopore
author Feliciano, Gustavo T. [UNESP]
author_facet Feliciano, Gustavo T. [UNESP]
Sanz-Navarro, Carlos
Coutinho-Neto, Mauricio Domingues
Ordejón, Pablo
Scheicher, Ralph H.
Rocha, Alexandre Reily [UNESP]
author_role author
author2 Sanz-Navarro, Carlos
Coutinho-Neto, Mauricio Domingues
Ordejón, Pablo
Scheicher, Ralph H.
Rocha, Alexandre Reily [UNESP]
author2_role author
author
author
author
author
dc.contributor.none.fl_str_mv Universidade Estadual Paulista (Unesp)
Universidade Federal do ABC (UFABC)
ICN2-Institut Català de Nanociència i Nanotecnologia
ICN2 Building
Uppsala University
dc.contributor.author.fl_str_mv Feliciano, Gustavo T. [UNESP]
Sanz-Navarro, Carlos
Coutinho-Neto, Mauricio Domingues
Ordejón, Pablo
Scheicher, Ralph H.
Rocha, Alexandre Reily [UNESP]
description The advent of parallelized automated methods for rapid whole-genome analysis has led to an exponential drop in costs, thus greatly accelerating biomedical research and discovery. Third-generation sequencing techniques, which would utilize the characteristic electrical conductance of the four different nucleotides, could facilitate longer base read lengths and an even lower price per genome. In this work, we propose and apply a quantum-classical hybrid methodology to quantitatively determine the influence of the solvent on the dynamics of DNA and the resulting electron transport properties of a prototypic sequencing device utilizing a graphene nanopore through which the nucleic-acid chain is threaded. Our results show that charge fluctuations in the nucleotides are responsible for characteristic conductance modulations in this system, which can be regarded as a field-effect transistor tuned by the dynamic aqueous environment.
publishDate 2015
dc.date.none.fl_str_mv 2015-03-09
2018-12-11T16:58:40Z
2018-12-11T16:58:40Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.1103/PhysRevApplied.3.034003
Physical Review Applied, v. 3, n. 3, 2015.
2331-7019
http://hdl.handle.net/11449/172101
10.1103/PhysRevApplied.3.034003
2-s2.0-84942354270
url http://dx.doi.org/10.1103/PhysRevApplied.3.034003
http://hdl.handle.net/11449/172101
identifier_str_mv Physical Review Applied, v. 3, n. 3, 2015.
2331-7019
10.1103/PhysRevApplied.3.034003
2-s2.0-84942354270
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Physical Review Applied
2,089
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.source.none.fl_str_mv Scopus
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
repository.mail.fl_str_mv repositoriounesp@unesp.br
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