Capacitive DNA Detection Driven by Electronic Charge Fluctuations in a Graphene Nanopore
| Autor(a) principal: | |
|---|---|
| Data de Publicação: | 2015 |
| Outros Autores: | , , , , |
| Tipo de documento: | Artigo |
| Idioma: | eng |
| Título da fonte: | Repositório Institucional da UNESP |
| Texto Completo: | http://dx.doi.org/10.1103/PhysRevApplied.3.034003 http://hdl.handle.net/11449/172101 |
Resumo: | The advent of parallelized automated methods for rapid whole-genome analysis has led to an exponential drop in costs, thus greatly accelerating biomedical research and discovery. Third-generation sequencing techniques, which would utilize the characteristic electrical conductance of the four different nucleotides, could facilitate longer base read lengths and an even lower price per genome. In this work, we propose and apply a quantum-classical hybrid methodology to quantitatively determine the influence of the solvent on the dynamics of DNA and the resulting electron transport properties of a prototypic sequencing device utilizing a graphene nanopore through which the nucleic-acid chain is threaded. Our results show that charge fluctuations in the nucleotides are responsible for characteristic conductance modulations in this system, which can be regarded as a field-effect transistor tuned by the dynamic aqueous environment. |
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Capacitive DNA Detection Driven by Electronic Charge Fluctuations in a Graphene NanoporeThe advent of parallelized automated methods for rapid whole-genome analysis has led to an exponential drop in costs, thus greatly accelerating biomedical research and discovery. Third-generation sequencing techniques, which would utilize the characteristic electrical conductance of the four different nucleotides, could facilitate longer base read lengths and an even lower price per genome. In this work, we propose and apply a quantum-classical hybrid methodology to quantitatively determine the influence of the solvent on the dynamics of DNA and the resulting electron transport properties of a prototypic sequencing device utilizing a graphene nanopore through which the nucleic-acid chain is threaded. Our results show that charge fluctuations in the nucleotides are responsible for characteristic conductance modulations in this system, which can be regarded as a field-effect transistor tuned by the dynamic aqueous environment.Departamento de Físico Química Instituto de Química Universidade Estadual Paulista (UNESP)Centro de Ciências Naturais e Humanas Universidade Federal Do ABCICN2-Institut Català de Nanociència i Nanotecnologia Campus UABCSIC-Consejo Superior de Investigaciones Científicas ICN2 BuildingDepartment of Physics and Astronomy Division of Materials Theory Uppsala UniversityInstituto de Física Teórica Universidade Estadual Paulista (UNESP)Departamento de Físico Química Instituto de Química Universidade Estadual Paulista (UNESP)Instituto de Física Teórica Universidade Estadual Paulista (UNESP)Universidade Estadual Paulista (Unesp)Universidade Federal do ABC (UFABC)ICN2-Institut Català de Nanociència i NanotecnologiaICN2 BuildingUppsala UniversityFeliciano, Gustavo T. [UNESP]Sanz-Navarro, CarlosCoutinho-Neto, Mauricio DominguesOrdejón, PabloScheicher, Ralph H.Rocha, Alexandre Reily [UNESP]2018-12-11T16:58:40Z2018-12-11T16:58:40Z2015-03-09info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlehttp://dx.doi.org/10.1103/PhysRevApplied.3.034003Physical Review Applied, v. 3, n. 3, 2015.2331-7019http://hdl.handle.net/11449/17210110.1103/PhysRevApplied.3.0340032-s2.0-84942354270Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengPhysical Review Applied2,089info:eu-repo/semantics/openAccess2024-12-03T15:32:59Zoai:repositorio.unesp.br:11449/172101Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestrepositoriounesp@unesp.bropendoar:29462024-12-03T15:32:59Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false |
| dc.title.none.fl_str_mv |
Capacitive DNA Detection Driven by Electronic Charge Fluctuations in a Graphene Nanopore |
| title |
Capacitive DNA Detection Driven by Electronic Charge Fluctuations in a Graphene Nanopore |
| spellingShingle |
Capacitive DNA Detection Driven by Electronic Charge Fluctuations in a Graphene Nanopore Feliciano, Gustavo T. [UNESP] |
| title_short |
Capacitive DNA Detection Driven by Electronic Charge Fluctuations in a Graphene Nanopore |
| title_full |
Capacitive DNA Detection Driven by Electronic Charge Fluctuations in a Graphene Nanopore |
| title_fullStr |
Capacitive DNA Detection Driven by Electronic Charge Fluctuations in a Graphene Nanopore |
| title_full_unstemmed |
Capacitive DNA Detection Driven by Electronic Charge Fluctuations in a Graphene Nanopore |
| title_sort |
Capacitive DNA Detection Driven by Electronic Charge Fluctuations in a Graphene Nanopore |
| author |
Feliciano, Gustavo T. [UNESP] |
| author_facet |
Feliciano, Gustavo T. [UNESP] Sanz-Navarro, Carlos Coutinho-Neto, Mauricio Domingues Ordejón, Pablo Scheicher, Ralph H. Rocha, Alexandre Reily [UNESP] |
| author_role |
author |
| author2 |
Sanz-Navarro, Carlos Coutinho-Neto, Mauricio Domingues Ordejón, Pablo Scheicher, Ralph H. Rocha, Alexandre Reily [UNESP] |
| author2_role |
author author author author author |
| dc.contributor.none.fl_str_mv |
Universidade Estadual Paulista (Unesp) Universidade Federal do ABC (UFABC) ICN2-Institut Català de Nanociència i Nanotecnologia ICN2 Building Uppsala University |
| dc.contributor.author.fl_str_mv |
Feliciano, Gustavo T. [UNESP] Sanz-Navarro, Carlos Coutinho-Neto, Mauricio Domingues Ordejón, Pablo Scheicher, Ralph H. Rocha, Alexandre Reily [UNESP] |
| description |
The advent of parallelized automated methods for rapid whole-genome analysis has led to an exponential drop in costs, thus greatly accelerating biomedical research and discovery. Third-generation sequencing techniques, which would utilize the characteristic electrical conductance of the four different nucleotides, could facilitate longer base read lengths and an even lower price per genome. In this work, we propose and apply a quantum-classical hybrid methodology to quantitatively determine the influence of the solvent on the dynamics of DNA and the resulting electron transport properties of a prototypic sequencing device utilizing a graphene nanopore through which the nucleic-acid chain is threaded. Our results show that charge fluctuations in the nucleotides are responsible for characteristic conductance modulations in this system, which can be regarded as a field-effect transistor tuned by the dynamic aqueous environment. |
| publishDate |
2015 |
| dc.date.none.fl_str_mv |
2015-03-09 2018-12-11T16:58:40Z 2018-12-11T16:58:40Z |
| dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
| dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
| format |
article |
| status_str |
publishedVersion |
| dc.identifier.uri.fl_str_mv |
http://dx.doi.org/10.1103/PhysRevApplied.3.034003 Physical Review Applied, v. 3, n. 3, 2015. 2331-7019 http://hdl.handle.net/11449/172101 10.1103/PhysRevApplied.3.034003 2-s2.0-84942354270 |
| url |
http://dx.doi.org/10.1103/PhysRevApplied.3.034003 http://hdl.handle.net/11449/172101 |
| identifier_str_mv |
Physical Review Applied, v. 3, n. 3, 2015. 2331-7019 10.1103/PhysRevApplied.3.034003 2-s2.0-84942354270 |
| dc.language.iso.fl_str_mv |
eng |
| language |
eng |
| dc.relation.none.fl_str_mv |
Physical Review Applied 2,089 |
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info:eu-repo/semantics/openAccess |
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openAccess |
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Scopus reponame:Repositório Institucional da UNESP instname:Universidade Estadual Paulista (UNESP) instacron:UNESP |
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Universidade Estadual Paulista (UNESP) |
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UNESP |
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UNESP |
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Repositório Institucional da UNESP |
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Repositório Institucional da UNESP |
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Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP) |
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repositoriounesp@unesp.br |
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1854947738845708288 |