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Transcriptome-based phylogenomic analysis reveals evidence of ancient hybridization events in the Mepraia genus (Hemiptera: Reduviidae: Triatominae)

Bibliographic Details
Main Author: Belintani, Tiago
Publication Date: 2023
Other Authors: Congrains, Carlos [UNESP], Pinotti, Heloisa, Chahad-Ehlers, Samira, de Brito, Reinaldo A., Oliveira, Jader, Frías Lasserre, Daniel, Fontes, Felipe Mendes, Da Rosa, João Aristeu
Format: Article
Language: eng
Source: Repositório Institucional da UNESP
Download full: http://dx.doi.org/10.3389/fevo.2023.1215319
https://hdl.handle.net/11449/301378
Summary: Introduction: The Mepraia genus is composed of three endemic species in Chile, namely Mepraia spinolai, Mepraia gajardoi, and Mepraia parapatrica, all capable of transmitting the causative agent of Chagas disease. Although species divergence within this genus is supported by morphological, molecular, and geological evidence, it has never been validated by genome-wide data. Methods: In this sense, a pioneering phylogenomic study was conducted using transcriptome data of the three species, aiming to infer robust phylogenies and evaluate the impact of interspecific gene flow on the evolution of these insects. Our transcriptomes were used to robustly infer the phylogenetic relationships, employing multi-species coalescent and supermatrix approaches, as well as to investigate the occurrence of introgression. Results and discussion: The inferred phylogenies support the monophyly of the three described taxa and infer divergence times, although gene trees display high levels of discordance. Our results indicate widespread introgression among Mepraia lineages. Thus, our results support that Mepraia diversification occurred in a short period resulting in reticulate phylogenies and low genetic diversity. Additionally, we obtained evidence of introgression suggesting that ancient hybridization has had a major role in the evolution of the three Mepraia species.
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spelling Transcriptome-based phylogenomic analysis reveals evidence of ancient hybridization events in the Mepraia genus (Hemiptera: Reduviidae: Triatominae)ILSinterspecific gene flowintrogressionmulti-species coalescent approachreticulate phylogeniesIntroduction: The Mepraia genus is composed of three endemic species in Chile, namely Mepraia spinolai, Mepraia gajardoi, and Mepraia parapatrica, all capable of transmitting the causative agent of Chagas disease. Although species divergence within this genus is supported by morphological, molecular, and geological evidence, it has never been validated by genome-wide data. Methods: In this sense, a pioneering phylogenomic study was conducted using transcriptome data of the three species, aiming to infer robust phylogenies and evaluate the impact of interspecific gene flow on the evolution of these insects. Our transcriptomes were used to robustly infer the phylogenetic relationships, employing multi-species coalescent and supermatrix approaches, as well as to investigate the occurrence of introgression. Results and discussion: The inferred phylogenies support the monophyly of the three described taxa and infer divergence times, although gene trees display high levels of discordance. Our results indicate widespread introgression among Mepraia lineages. Thus, our results support that Mepraia diversification occurred in a short period resulting in reticulate phylogenies and low genetic diversity. Additionally, we obtained evidence of introgression suggesting that ancient hybridization has had a major role in the evolution of the three Mepraia species.Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)Institute of Biology Campinas State University (Unicamp), SPDepartment of Plant and Environmental Protection Services University of Hawaii at ManoaSchool of Pharmaceutical Sciences São Paulo State University (Unesp), SPDepartment of Genetics and Evolution Federal University of São Carlos (UFSCar), SPLaboratory of Entomology in Public Health Department of Epidemiology Faculty of Public Health University of São Paulo, SPInstituto de Entomologia Univ. Metropolitana de Ciencias de la EducaciónPost-Graduation Program in Health and Environment Tiradentes University (UNIT), SESchool of Pharmaceutical Sciences São Paulo State University (Unesp), SPFAPESP: 17/06460-4CAPES: Financing Code 001.Universidade Estadual de Campinas (UNICAMP)University of Hawaii at ManoaUniversidade Estadual Paulista (UNESP)Universidade Federal de São Carlos (UFSCar)Universidade de São Paulo (USP)Univ. Metropolitana de Ciencias de la EducaciónTiradentes University (UNIT)Belintani, TiagoCongrains, Carlos [UNESP]Pinotti, HeloisaChahad-Ehlers, Samirade Brito, Reinaldo A.Oliveira, JaderFrías Lasserre, DanielFontes, Felipe MendesDa Rosa, João Aristeu2025-04-29T18:58:02Z2023-01-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlehttp://dx.doi.org/10.3389/fevo.2023.1215319Frontiers in Ecology and Evolution, v. 11.2296-701Xhttps://hdl.handle.net/11449/30137810.3389/fevo.2023.12153192-s2.0-85165883146Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengFrontiers in Ecology and Evolutioninfo:eu-repo/semantics/openAccess2025-05-01T05:22:30Zoai:repositorio.unesp.br:11449/301378Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestrepositoriounesp@unesp.bropendoar:29462025-05-01T05:22:30Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Transcriptome-based phylogenomic analysis reveals evidence of ancient hybridization events in the Mepraia genus (Hemiptera: Reduviidae: Triatominae)
title Transcriptome-based phylogenomic analysis reveals evidence of ancient hybridization events in the Mepraia genus (Hemiptera: Reduviidae: Triatominae)
spellingShingle Transcriptome-based phylogenomic analysis reveals evidence of ancient hybridization events in the Mepraia genus (Hemiptera: Reduviidae: Triatominae)
Belintani, Tiago
ILS
interspecific gene flow
introgression
multi-species coalescent approach
reticulate phylogenies
title_short Transcriptome-based phylogenomic analysis reveals evidence of ancient hybridization events in the Mepraia genus (Hemiptera: Reduviidae: Triatominae)
title_full Transcriptome-based phylogenomic analysis reveals evidence of ancient hybridization events in the Mepraia genus (Hemiptera: Reduviidae: Triatominae)
title_fullStr Transcriptome-based phylogenomic analysis reveals evidence of ancient hybridization events in the Mepraia genus (Hemiptera: Reduviidae: Triatominae)
title_full_unstemmed Transcriptome-based phylogenomic analysis reveals evidence of ancient hybridization events in the Mepraia genus (Hemiptera: Reduviidae: Triatominae)
title_sort Transcriptome-based phylogenomic analysis reveals evidence of ancient hybridization events in the Mepraia genus (Hemiptera: Reduviidae: Triatominae)
author Belintani, Tiago
author_facet Belintani, Tiago
Congrains, Carlos [UNESP]
Pinotti, Heloisa
Chahad-Ehlers, Samira
de Brito, Reinaldo A.
Oliveira, Jader
Frías Lasserre, Daniel
Fontes, Felipe Mendes
Da Rosa, João Aristeu
author_role author
author2 Congrains, Carlos [UNESP]
Pinotti, Heloisa
Chahad-Ehlers, Samira
de Brito, Reinaldo A.
Oliveira, Jader
Frías Lasserre, Daniel
Fontes, Felipe Mendes
Da Rosa, João Aristeu
author2_role author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv Universidade Estadual de Campinas (UNICAMP)
University of Hawaii at Manoa
Universidade Estadual Paulista (UNESP)
Universidade Federal de São Carlos (UFSCar)
Universidade de São Paulo (USP)
Univ. Metropolitana de Ciencias de la Educación
Tiradentes University (UNIT)
dc.contributor.author.fl_str_mv Belintani, Tiago
Congrains, Carlos [UNESP]
Pinotti, Heloisa
Chahad-Ehlers, Samira
de Brito, Reinaldo A.
Oliveira, Jader
Frías Lasserre, Daniel
Fontes, Felipe Mendes
Da Rosa, João Aristeu
dc.subject.por.fl_str_mv ILS
interspecific gene flow
introgression
multi-species coalescent approach
reticulate phylogenies
topic ILS
interspecific gene flow
introgression
multi-species coalescent approach
reticulate phylogenies
description Introduction: The Mepraia genus is composed of three endemic species in Chile, namely Mepraia spinolai, Mepraia gajardoi, and Mepraia parapatrica, all capable of transmitting the causative agent of Chagas disease. Although species divergence within this genus is supported by morphological, molecular, and geological evidence, it has never been validated by genome-wide data. Methods: In this sense, a pioneering phylogenomic study was conducted using transcriptome data of the three species, aiming to infer robust phylogenies and evaluate the impact of interspecific gene flow on the evolution of these insects. Our transcriptomes were used to robustly infer the phylogenetic relationships, employing multi-species coalescent and supermatrix approaches, as well as to investigate the occurrence of introgression. Results and discussion: The inferred phylogenies support the monophyly of the three described taxa and infer divergence times, although gene trees display high levels of discordance. Our results indicate widespread introgression among Mepraia lineages. Thus, our results support that Mepraia diversification occurred in a short period resulting in reticulate phylogenies and low genetic diversity. Additionally, we obtained evidence of introgression suggesting that ancient hybridization has had a major role in the evolution of the three Mepraia species.
publishDate 2023
dc.date.none.fl_str_mv 2023-01-01
2025-04-29T18:58:02Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.3389/fevo.2023.1215319
Frontiers in Ecology and Evolution, v. 11.
2296-701X
https://hdl.handle.net/11449/301378
10.3389/fevo.2023.1215319
2-s2.0-85165883146
url http://dx.doi.org/10.3389/fevo.2023.1215319
https://hdl.handle.net/11449/301378
identifier_str_mv Frontiers in Ecology and Evolution, v. 11.
2296-701X
10.3389/fevo.2023.1215319
2-s2.0-85165883146
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Frontiers in Ecology and Evolution
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.source.none.fl_str_mv Scopus
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
repository.mail.fl_str_mv repositoriounesp@unesp.br
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