EPIGUI: Graphical User Interface for Simulating Epidemics on Networks

Bibliographic Details
Main Author: Pinto, E. R. [UNESP]
Publication Date: 2023
Other Authors: Nepomuceno, E. G., Kusak, J., Campanharo, A. S. L. O. [UNESP]
Format: Article
Language: eng
Source: Repositório Institucional da UNESP
Download full: http://dx.doi.org/10.5540/tcam.2022.024.01.00091
http://hdl.handle.net/11449/244895
Summary: This paper presents a graphical interface called EPIGUI, which allows the study of the dynamics of an infectious disease spread using compartmental models in combination with complex networks. This interface aims at considering stochastic factors that govern the evolution of an infection in a network. Moreover, it provides simple tools to create networks of agents and to define the epidemiological parameters of outbreaks. There are six common infectious disease models (SI, SIS, SIR, SIRS, SEIR, and SEIRS) or a user can provide another model, combining compartments. Moreover, in the simulations the user can either include a synthetic network generated according to a network model (random, small-world, scalefree, modular, or hierarchical) or a real network. This approach can help understand the paths followed by outbreaks in a given community and design new strategies to prevent and to control them.
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spelling EPIGUI: Graphical User Interface for Simulating Epidemics on Networksagent-based modelcomplex networksinfectious diseasescomputational graphical interfaceThis paper presents a graphical interface called EPIGUI, which allows the study of the dynamics of an infectious disease spread using compartmental models in combination with complex networks. This interface aims at considering stochastic factors that govern the evolution of an infection in a network. Moreover, it provides simple tools to create networks of agents and to define the epidemiological parameters of outbreaks. There are six common infectious disease models (SI, SIS, SIR, SIRS, SEIR, and SEIRS) or a user can provide another model, combining compartments. Moreover, in the simulations the user can either include a synthetic network generated according to a network model (random, small-world, scalefree, modular, or hierarchical) or a real network. This approach can help understand the paths followed by outbreaks in a given community and design new strategies to prevent and to control them.Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)São Paulo State University, Institute of BiosciencesMaynooth University, Centre for Ocean Energy Research and Department of Electronic EngineeringAGH University of Science and Technology, Faculty of Computer Science, Electronics and TelecommunicationsSão Paulo State University, Institute of BiosciencesCAPES: 1770124FAPESP: 2018/25358-9Sociedade Brasileira de Matemática Aplicada e Computacional - SBMACUniversidade Estadual Paulista (UNESP)Maynooth UniversityAGH University of Science and TechnologyPinto, E. R. [UNESP]Nepomuceno, E. G.Kusak, J.Campanharo, A. S. L. O. [UNESP]2023-07-29T11:14:59Z2023-07-29T11:14:59Z2023-03-27info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article91-120application/pdfhttp://dx.doi.org/10.5540/tcam.2022.024.01.00091Trends in Computational and Applied Mathematics. Sociedade Brasileira de Matemática Aplicada e Computacional - SBMAC, v. 24, n. 1, p. 91-120, 2023.2676-0029http://hdl.handle.net/11449/24489510.5540/tcam.2022.024.01.00091S2676-00292023000100091S2676-00292023000100091.pdfSciELOreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengTrends in Computational and Applied Mathematicsinfo:eu-repo/semantics/openAccess2024-01-19T06:30:42Zoai:repositorio.unesp.br:11449/244895Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestrepositoriounesp@unesp.bropendoar:29462024-01-19T06:30:42Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv EPIGUI: Graphical User Interface for Simulating Epidemics on Networks
title EPIGUI: Graphical User Interface for Simulating Epidemics on Networks
spellingShingle EPIGUI: Graphical User Interface for Simulating Epidemics on Networks
Pinto, E. R. [UNESP]
agent-based model
complex networks
infectious diseases
computational graphical interface
title_short EPIGUI: Graphical User Interface for Simulating Epidemics on Networks
title_full EPIGUI: Graphical User Interface for Simulating Epidemics on Networks
title_fullStr EPIGUI: Graphical User Interface for Simulating Epidemics on Networks
title_full_unstemmed EPIGUI: Graphical User Interface for Simulating Epidemics on Networks
title_sort EPIGUI: Graphical User Interface for Simulating Epidemics on Networks
author Pinto, E. R. [UNESP]
author_facet Pinto, E. R. [UNESP]
Nepomuceno, E. G.
Kusak, J.
Campanharo, A. S. L. O. [UNESP]
author_role author
author2 Nepomuceno, E. G.
Kusak, J.
Campanharo, A. S. L. O. [UNESP]
author2_role author
author
author
dc.contributor.none.fl_str_mv Universidade Estadual Paulista (UNESP)
Maynooth University
AGH University of Science and Technology
dc.contributor.author.fl_str_mv Pinto, E. R. [UNESP]
Nepomuceno, E. G.
Kusak, J.
Campanharo, A. S. L. O. [UNESP]
dc.subject.por.fl_str_mv agent-based model
complex networks
infectious diseases
computational graphical interface
topic agent-based model
complex networks
infectious diseases
computational graphical interface
description This paper presents a graphical interface called EPIGUI, which allows the study of the dynamics of an infectious disease spread using compartmental models in combination with complex networks. This interface aims at considering stochastic factors that govern the evolution of an infection in a network. Moreover, it provides simple tools to create networks of agents and to define the epidemiological parameters of outbreaks. There are six common infectious disease models (SI, SIS, SIR, SIRS, SEIR, and SEIRS) or a user can provide another model, combining compartments. Moreover, in the simulations the user can either include a synthetic network generated according to a network model (random, small-world, scalefree, modular, or hierarchical) or a real network. This approach can help understand the paths followed by outbreaks in a given community and design new strategies to prevent and to control them.
publishDate 2023
dc.date.none.fl_str_mv 2023-07-29T11:14:59Z
2023-07-29T11:14:59Z
2023-03-27
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.5540/tcam.2022.024.01.00091
Trends in Computational and Applied Mathematics. Sociedade Brasileira de Matemática Aplicada e Computacional - SBMAC, v. 24, n. 1, p. 91-120, 2023.
2676-0029
http://hdl.handle.net/11449/244895
10.5540/tcam.2022.024.01.00091
S2676-00292023000100091
S2676-00292023000100091.pdf
url http://dx.doi.org/10.5540/tcam.2022.024.01.00091
http://hdl.handle.net/11449/244895
identifier_str_mv Trends in Computational and Applied Mathematics. Sociedade Brasileira de Matemática Aplicada e Computacional - SBMAC, v. 24, n. 1, p. 91-120, 2023.
2676-0029
10.5540/tcam.2022.024.01.00091
S2676-00292023000100091
S2676-00292023000100091.pdf
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Trends in Computational and Applied Mathematics
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv 91-120
application/pdf
dc.publisher.none.fl_str_mv Sociedade Brasileira de Matemática Aplicada e Computacional - SBMAC
publisher.none.fl_str_mv Sociedade Brasileira de Matemática Aplicada e Computacional - SBMAC
dc.source.none.fl_str_mv SciELO
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
repository.mail.fl_str_mv repositoriounesp@unesp.br
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