Computational analysis of histological images from hematoxylin and eosin-stained oral epithelial dysplasia tissue sections

Detalhes bibliográficos
Autor(a) principal: Silva, Adriano Barbosa
Data de Publicação: 2022
Outros Autores: Martins, Alessandro Santana, Tosta, Thaína Aparecida Azevedo, Neves, Leandro Alves [UNESP], Servato, João Paulo Silva, de Araújo, Marcelo Sivieri, de Faria, Paulo Rogério, do Nascimento, Marcelo Zanchetta
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.1016/j.eswa.2021.116456
http://hdl.handle.net/11449/230237
Resumo: Oral epithelial dysplasia is a precancerous lesion that presents alterations in the shape and size of cell nuclei and can be graded as mild, moderate and severe. The conventional process for diagnosis of this lesion is complex, time-consuming and subject to errors. The use of digital systems in histological analysis can aid specialists to obtain data that allows a robust and fast investigation of the lesion. This work presents a method for dysplasia quantification in histopathological images of the oral cavity using machine learning models. The methodology includes the steps of nuclei segmentation, post-processing, feature extraction and classification. On the segmentation step, the Mask R-CNN neural network was trained using nuclei masks, where objects were detected. The post-processing step employed morphological operations to remove false positive and negative areas. Then, 23 morphological and non-morphological features such as area, orientation, solidity and entropy were computed and a polynomial classifier was employed to distinguish the images among the lesion's grades. This approach was applied in a dataset with 296 regions of mice tongue images, where 9155 cell nuclei were identified and analysed. Metrics such as accuracy and area under the ROC curve were employed to evaluate the methodology by comparing it with the gold standard marked by specialists and other methods present in the literature. This work presents a novel study for the classification of automated grading of oral dysplasia lesions based on the association of CNN segmentation and polynomial algorithm. The segmentation step resulted in accuracies ranging from 88.92% to 90.35% and the classification step obtained area under the ROC curve ranging from 0.88 to 0.97. When compared to other algorithms present in the literature, our methods showed more relevant results, obtaining higher accuracy and AUC values. These values showed that the proposed methodology contributed to the state-of-the-art and can be used as a tool to aid pathologists with precise values for investigating dysplastic tissue lesions.
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spelling Computational analysis of histological images from hematoxylin and eosin-stained oral epithelial dysplasia tissue sectionsConvolutional neural networkDysplasiaHistological imageOral cavityPolynomial classifierOral epithelial dysplasia is a precancerous lesion that presents alterations in the shape and size of cell nuclei and can be graded as mild, moderate and severe. The conventional process for diagnosis of this lesion is complex, time-consuming and subject to errors. The use of digital systems in histological analysis can aid specialists to obtain data that allows a robust and fast investigation of the lesion. This work presents a method for dysplasia quantification in histopathological images of the oral cavity using machine learning models. The methodology includes the steps of nuclei segmentation, post-processing, feature extraction and classification. On the segmentation step, the Mask R-CNN neural network was trained using nuclei masks, where objects were detected. The post-processing step employed morphological operations to remove false positive and negative areas. Then, 23 morphological and non-morphological features such as area, orientation, solidity and entropy were computed and a polynomial classifier was employed to distinguish the images among the lesion's grades. This approach was applied in a dataset with 296 regions of mice tongue images, where 9155 cell nuclei were identified and analysed. Metrics such as accuracy and area under the ROC curve were employed to evaluate the methodology by comparing it with the gold standard marked by specialists and other methods present in the literature. This work presents a novel study for the classification of automated grading of oral dysplasia lesions based on the association of CNN segmentation and polynomial algorithm. The segmentation step resulted in accuracies ranging from 88.92% to 90.35% and the classification step obtained area under the ROC curve ranging from 0.88 to 0.97. When compared to other algorithms present in the literature, our methods showed more relevant results, obtaining higher accuracy and AUC values. These values showed that the proposed methodology contributed to the state-of-the-art and can be used as a tool to aid pathologists with precise values for investigating dysplastic tissue lesions.Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)Fundação de Amparo à Pesquisa do Estado de Minas Gerais (FAPEMIG)Faculty of Computer Science (FACOM) Federal University of Uberlândia (UFU), Av. João Naves de Ávila 2121, BLBFederal Institute of Triângulo Mineiro (IFTM), R. Belarmino Vilela Junqueira, S/NScience and Technology Institute Federal University of São Paulo (UNIFESP), Av. Cesare Mansueto Giulio Lattes, 1201Department of Computer Science and Statistics (DCCE) São Paulo State University (UNESP), R. Cristóvão Colombo, 2265School of Dentistry University of Uberaba (UNIUBE), Av. Nenê Sabino, 1801Department of Histology and Morphology Institute of Biomedical Science Federal University of Uberlândia (UFU), Av. Amazonas, S/NDepartment of Computer Science and Statistics (DCCE) São Paulo State University (UNESP), R. Cristóvão Colombo, 2265CAPES: 001CNPq: 304848/2018-2CNPq: 313365/2018-0CNPq: 430965/2018-4FAPEMIG: APQ-00578-18FAPEMIG: APQ-01129-21Universidade Federal de Uberlândia (UFU)Federal Institute of Triângulo Mineiro (IFTM)Universidade de São Paulo (USP)Universidade Estadual Paulista (UNESP)University of Uberaba (UNIUBE)Silva, Adriano BarbosaMartins, Alessandro SantanaTosta, Thaína Aparecida AzevedoNeves, Leandro Alves [UNESP]Servato, João Paulo Silvade Araújo, Marcelo Sivieride Faria, Paulo Rogériodo Nascimento, Marcelo Zanchetta2022-04-29T08:38:40Z2022-04-29T08:38:40Z2022-05-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlehttp://dx.doi.org/10.1016/j.eswa.2021.116456Expert Systems with Applications, v. 193.0957-4174http://hdl.handle.net/11449/23023710.1016/j.eswa.2021.1164562-s2.0-85123007376Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengExpert Systems with Applicationsinfo:eu-repo/semantics/openAccess2024-10-25T14:47:57Zoai:repositorio.unesp.br:11449/230237Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestrepositoriounesp@unesp.bropendoar:29462024-10-25T14:47:57Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Computational analysis of histological images from hematoxylin and eosin-stained oral epithelial dysplasia tissue sections
title Computational analysis of histological images from hematoxylin and eosin-stained oral epithelial dysplasia tissue sections
spellingShingle Computational analysis of histological images from hematoxylin and eosin-stained oral epithelial dysplasia tissue sections
Silva, Adriano Barbosa
Convolutional neural network
Dysplasia
Histological image
Oral cavity
Polynomial classifier
title_short Computational analysis of histological images from hematoxylin and eosin-stained oral epithelial dysplasia tissue sections
title_full Computational analysis of histological images from hematoxylin and eosin-stained oral epithelial dysplasia tissue sections
title_fullStr Computational analysis of histological images from hematoxylin and eosin-stained oral epithelial dysplasia tissue sections
title_full_unstemmed Computational analysis of histological images from hematoxylin and eosin-stained oral epithelial dysplasia tissue sections
title_sort Computational analysis of histological images from hematoxylin and eosin-stained oral epithelial dysplasia tissue sections
author Silva, Adriano Barbosa
author_facet Silva, Adriano Barbosa
Martins, Alessandro Santana
Tosta, Thaína Aparecida Azevedo
Neves, Leandro Alves [UNESP]
Servato, João Paulo Silva
de Araújo, Marcelo Sivieri
de Faria, Paulo Rogério
do Nascimento, Marcelo Zanchetta
author_role author
author2 Martins, Alessandro Santana
Tosta, Thaína Aparecida Azevedo
Neves, Leandro Alves [UNESP]
Servato, João Paulo Silva
de Araújo, Marcelo Sivieri
de Faria, Paulo Rogério
do Nascimento, Marcelo Zanchetta
author2_role author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv Universidade Federal de Uberlândia (UFU)
Federal Institute of Triângulo Mineiro (IFTM)
Universidade de São Paulo (USP)
Universidade Estadual Paulista (UNESP)
University of Uberaba (UNIUBE)
dc.contributor.author.fl_str_mv Silva, Adriano Barbosa
Martins, Alessandro Santana
Tosta, Thaína Aparecida Azevedo
Neves, Leandro Alves [UNESP]
Servato, João Paulo Silva
de Araújo, Marcelo Sivieri
de Faria, Paulo Rogério
do Nascimento, Marcelo Zanchetta
dc.subject.por.fl_str_mv Convolutional neural network
Dysplasia
Histological image
Oral cavity
Polynomial classifier
topic Convolutional neural network
Dysplasia
Histological image
Oral cavity
Polynomial classifier
description Oral epithelial dysplasia is a precancerous lesion that presents alterations in the shape and size of cell nuclei and can be graded as mild, moderate and severe. The conventional process for diagnosis of this lesion is complex, time-consuming and subject to errors. The use of digital systems in histological analysis can aid specialists to obtain data that allows a robust and fast investigation of the lesion. This work presents a method for dysplasia quantification in histopathological images of the oral cavity using machine learning models. The methodology includes the steps of nuclei segmentation, post-processing, feature extraction and classification. On the segmentation step, the Mask R-CNN neural network was trained using nuclei masks, where objects were detected. The post-processing step employed morphological operations to remove false positive and negative areas. Then, 23 morphological and non-morphological features such as area, orientation, solidity and entropy were computed and a polynomial classifier was employed to distinguish the images among the lesion's grades. This approach was applied in a dataset with 296 regions of mice tongue images, where 9155 cell nuclei were identified and analysed. Metrics such as accuracy and area under the ROC curve were employed to evaluate the methodology by comparing it with the gold standard marked by specialists and other methods present in the literature. This work presents a novel study for the classification of automated grading of oral dysplasia lesions based on the association of CNN segmentation and polynomial algorithm. The segmentation step resulted in accuracies ranging from 88.92% to 90.35% and the classification step obtained area under the ROC curve ranging from 0.88 to 0.97. When compared to other algorithms present in the literature, our methods showed more relevant results, obtaining higher accuracy and AUC values. These values showed that the proposed methodology contributed to the state-of-the-art and can be used as a tool to aid pathologists with precise values for investigating dysplastic tissue lesions.
publishDate 2022
dc.date.none.fl_str_mv 2022-04-29T08:38:40Z
2022-04-29T08:38:40Z
2022-05-01
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.1016/j.eswa.2021.116456
Expert Systems with Applications, v. 193.
0957-4174
http://hdl.handle.net/11449/230237
10.1016/j.eswa.2021.116456
2-s2.0-85123007376
url http://dx.doi.org/10.1016/j.eswa.2021.116456
http://hdl.handle.net/11449/230237
identifier_str_mv Expert Systems with Applications, v. 193.
0957-4174
10.1016/j.eswa.2021.116456
2-s2.0-85123007376
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Expert Systems with Applications
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.source.none.fl_str_mv Scopus
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
repository.mail.fl_str_mv repositoriounesp@unesp.br
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