Computational analysis of histological images from hematoxylin and eosin-stained oral epithelial dysplasia tissue sections
| Autor(a) principal: | |
|---|---|
| Data de Publicação: | 2022 |
| Outros Autores: | , , , , , , |
| Tipo de documento: | Artigo |
| Idioma: | eng |
| Título da fonte: | Repositório Institucional da UNESP |
| Texto Completo: | http://dx.doi.org/10.1016/j.eswa.2021.116456 http://hdl.handle.net/11449/230237 |
Resumo: | Oral epithelial dysplasia is a precancerous lesion that presents alterations in the shape and size of cell nuclei and can be graded as mild, moderate and severe. The conventional process for diagnosis of this lesion is complex, time-consuming and subject to errors. The use of digital systems in histological analysis can aid specialists to obtain data that allows a robust and fast investigation of the lesion. This work presents a method for dysplasia quantification in histopathological images of the oral cavity using machine learning models. The methodology includes the steps of nuclei segmentation, post-processing, feature extraction and classification. On the segmentation step, the Mask R-CNN neural network was trained using nuclei masks, where objects were detected. The post-processing step employed morphological operations to remove false positive and negative areas. Then, 23 morphological and non-morphological features such as area, orientation, solidity and entropy were computed and a polynomial classifier was employed to distinguish the images among the lesion's grades. This approach was applied in a dataset with 296 regions of mice tongue images, where 9155 cell nuclei were identified and analysed. Metrics such as accuracy and area under the ROC curve were employed to evaluate the methodology by comparing it with the gold standard marked by specialists and other methods present in the literature. This work presents a novel study for the classification of automated grading of oral dysplasia lesions based on the association of CNN segmentation and polynomial algorithm. The segmentation step resulted in accuracies ranging from 88.92% to 90.35% and the classification step obtained area under the ROC curve ranging from 0.88 to 0.97. When compared to other algorithms present in the literature, our methods showed more relevant results, obtaining higher accuracy and AUC values. These values showed that the proposed methodology contributed to the state-of-the-art and can be used as a tool to aid pathologists with precise values for investigating dysplastic tissue lesions. |
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Computational analysis of histological images from hematoxylin and eosin-stained oral epithelial dysplasia tissue sectionsConvolutional neural networkDysplasiaHistological imageOral cavityPolynomial classifierOral epithelial dysplasia is a precancerous lesion that presents alterations in the shape and size of cell nuclei and can be graded as mild, moderate and severe. The conventional process for diagnosis of this lesion is complex, time-consuming and subject to errors. The use of digital systems in histological analysis can aid specialists to obtain data that allows a robust and fast investigation of the lesion. This work presents a method for dysplasia quantification in histopathological images of the oral cavity using machine learning models. The methodology includes the steps of nuclei segmentation, post-processing, feature extraction and classification. On the segmentation step, the Mask R-CNN neural network was trained using nuclei masks, where objects were detected. The post-processing step employed morphological operations to remove false positive and negative areas. Then, 23 morphological and non-morphological features such as area, orientation, solidity and entropy were computed and a polynomial classifier was employed to distinguish the images among the lesion's grades. This approach was applied in a dataset with 296 regions of mice tongue images, where 9155 cell nuclei were identified and analysed. Metrics such as accuracy and area under the ROC curve were employed to evaluate the methodology by comparing it with the gold standard marked by specialists and other methods present in the literature. This work presents a novel study for the classification of automated grading of oral dysplasia lesions based on the association of CNN segmentation and polynomial algorithm. The segmentation step resulted in accuracies ranging from 88.92% to 90.35% and the classification step obtained area under the ROC curve ranging from 0.88 to 0.97. When compared to other algorithms present in the literature, our methods showed more relevant results, obtaining higher accuracy and AUC values. These values showed that the proposed methodology contributed to the state-of-the-art and can be used as a tool to aid pathologists with precise values for investigating dysplastic tissue lesions.Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)Fundação de Amparo à Pesquisa do Estado de Minas Gerais (FAPEMIG)Faculty of Computer Science (FACOM) Federal University of Uberlândia (UFU), Av. João Naves de Ávila 2121, BLBFederal Institute of Triângulo Mineiro (IFTM), R. Belarmino Vilela Junqueira, S/NScience and Technology Institute Federal University of São Paulo (UNIFESP), Av. Cesare Mansueto Giulio Lattes, 1201Department of Computer Science and Statistics (DCCE) São Paulo State University (UNESP), R. Cristóvão Colombo, 2265School of Dentistry University of Uberaba (UNIUBE), Av. Nenê Sabino, 1801Department of Histology and Morphology Institute of Biomedical Science Federal University of Uberlândia (UFU), Av. Amazonas, S/NDepartment of Computer Science and Statistics (DCCE) São Paulo State University (UNESP), R. Cristóvão Colombo, 2265CAPES: 001CNPq: 304848/2018-2CNPq: 313365/2018-0CNPq: 430965/2018-4FAPEMIG: APQ-00578-18FAPEMIG: APQ-01129-21Universidade Federal de Uberlândia (UFU)Federal Institute of Triângulo Mineiro (IFTM)Universidade de São Paulo (USP)Universidade Estadual Paulista (UNESP)University of Uberaba (UNIUBE)Silva, Adriano BarbosaMartins, Alessandro SantanaTosta, Thaína Aparecida AzevedoNeves, Leandro Alves [UNESP]Servato, João Paulo Silvade Araújo, Marcelo Sivieride Faria, Paulo Rogériodo Nascimento, Marcelo Zanchetta2022-04-29T08:38:40Z2022-04-29T08:38:40Z2022-05-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlehttp://dx.doi.org/10.1016/j.eswa.2021.116456Expert Systems with Applications, v. 193.0957-4174http://hdl.handle.net/11449/23023710.1016/j.eswa.2021.1164562-s2.0-85123007376Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengExpert Systems with Applicationsinfo:eu-repo/semantics/openAccess2024-10-25T14:47:57Zoai:repositorio.unesp.br:11449/230237Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestrepositoriounesp@unesp.bropendoar:29462024-10-25T14:47:57Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false |
| dc.title.none.fl_str_mv |
Computational analysis of histological images from hematoxylin and eosin-stained oral epithelial dysplasia tissue sections |
| title |
Computational analysis of histological images from hematoxylin and eosin-stained oral epithelial dysplasia tissue sections |
| spellingShingle |
Computational analysis of histological images from hematoxylin and eosin-stained oral epithelial dysplasia tissue sections Silva, Adriano Barbosa Convolutional neural network Dysplasia Histological image Oral cavity Polynomial classifier |
| title_short |
Computational analysis of histological images from hematoxylin and eosin-stained oral epithelial dysplasia tissue sections |
| title_full |
Computational analysis of histological images from hematoxylin and eosin-stained oral epithelial dysplasia tissue sections |
| title_fullStr |
Computational analysis of histological images from hematoxylin and eosin-stained oral epithelial dysplasia tissue sections |
| title_full_unstemmed |
Computational analysis of histological images from hematoxylin and eosin-stained oral epithelial dysplasia tissue sections |
| title_sort |
Computational analysis of histological images from hematoxylin and eosin-stained oral epithelial dysplasia tissue sections |
| author |
Silva, Adriano Barbosa |
| author_facet |
Silva, Adriano Barbosa Martins, Alessandro Santana Tosta, Thaína Aparecida Azevedo Neves, Leandro Alves [UNESP] Servato, João Paulo Silva de Araújo, Marcelo Sivieri de Faria, Paulo Rogério do Nascimento, Marcelo Zanchetta |
| author_role |
author |
| author2 |
Martins, Alessandro Santana Tosta, Thaína Aparecida Azevedo Neves, Leandro Alves [UNESP] Servato, João Paulo Silva de Araújo, Marcelo Sivieri de Faria, Paulo Rogério do Nascimento, Marcelo Zanchetta |
| author2_role |
author author author author author author author |
| dc.contributor.none.fl_str_mv |
Universidade Federal de Uberlândia (UFU) Federal Institute of Triângulo Mineiro (IFTM) Universidade de São Paulo (USP) Universidade Estadual Paulista (UNESP) University of Uberaba (UNIUBE) |
| dc.contributor.author.fl_str_mv |
Silva, Adriano Barbosa Martins, Alessandro Santana Tosta, Thaína Aparecida Azevedo Neves, Leandro Alves [UNESP] Servato, João Paulo Silva de Araújo, Marcelo Sivieri de Faria, Paulo Rogério do Nascimento, Marcelo Zanchetta |
| dc.subject.por.fl_str_mv |
Convolutional neural network Dysplasia Histological image Oral cavity Polynomial classifier |
| topic |
Convolutional neural network Dysplasia Histological image Oral cavity Polynomial classifier |
| description |
Oral epithelial dysplasia is a precancerous lesion that presents alterations in the shape and size of cell nuclei and can be graded as mild, moderate and severe. The conventional process for diagnosis of this lesion is complex, time-consuming and subject to errors. The use of digital systems in histological analysis can aid specialists to obtain data that allows a robust and fast investigation of the lesion. This work presents a method for dysplasia quantification in histopathological images of the oral cavity using machine learning models. The methodology includes the steps of nuclei segmentation, post-processing, feature extraction and classification. On the segmentation step, the Mask R-CNN neural network was trained using nuclei masks, where objects were detected. The post-processing step employed morphological operations to remove false positive and negative areas. Then, 23 morphological and non-morphological features such as area, orientation, solidity and entropy were computed and a polynomial classifier was employed to distinguish the images among the lesion's grades. This approach was applied in a dataset with 296 regions of mice tongue images, where 9155 cell nuclei were identified and analysed. Metrics such as accuracy and area under the ROC curve were employed to evaluate the methodology by comparing it with the gold standard marked by specialists and other methods present in the literature. This work presents a novel study for the classification of automated grading of oral dysplasia lesions based on the association of CNN segmentation and polynomial algorithm. The segmentation step resulted in accuracies ranging from 88.92% to 90.35% and the classification step obtained area under the ROC curve ranging from 0.88 to 0.97. When compared to other algorithms present in the literature, our methods showed more relevant results, obtaining higher accuracy and AUC values. These values showed that the proposed methodology contributed to the state-of-the-art and can be used as a tool to aid pathologists with precise values for investigating dysplastic tissue lesions. |
| publishDate |
2022 |
| dc.date.none.fl_str_mv |
2022-04-29T08:38:40Z 2022-04-29T08:38:40Z 2022-05-01 |
| dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
| dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
| format |
article |
| status_str |
publishedVersion |
| dc.identifier.uri.fl_str_mv |
http://dx.doi.org/10.1016/j.eswa.2021.116456 Expert Systems with Applications, v. 193. 0957-4174 http://hdl.handle.net/11449/230237 10.1016/j.eswa.2021.116456 2-s2.0-85123007376 |
| url |
http://dx.doi.org/10.1016/j.eswa.2021.116456 http://hdl.handle.net/11449/230237 |
| identifier_str_mv |
Expert Systems with Applications, v. 193. 0957-4174 10.1016/j.eswa.2021.116456 2-s2.0-85123007376 |
| dc.language.iso.fl_str_mv |
eng |
| language |
eng |
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Expert Systems with Applications |
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info:eu-repo/semantics/openAccess |
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openAccess |
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Scopus reponame:Repositório Institucional da UNESP instname:Universidade Estadual Paulista (UNESP) instacron:UNESP |
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Universidade Estadual Paulista (UNESP) |
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Repositório Institucional da UNESP |
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Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP) |
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repositoriounesp@unesp.br |
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1834484477032660992 |