Molecular basis of mucopolysaccharidosis IVA (Morquio A syndrome) : a review and classification of GALNS gene variants and reporting of 68 novel variants
Autor(a) principal: | |
---|---|
Data de Publicação: | 2021 |
Outros Autores: | , , , , , , , , , , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da UFRGS |
Texto Completo: | http://hdl.handle.net/10183/234553 |
Resumo: | Mucopolysaccharidosis IVA (MPS IVA, Morquio A syndrome) is a rare autosomal recessive lysosomal storage disorder caused by mutations in the N-acetylgalactosamine-6-sulfatase (GALNS) gene. We collected, analyzed, and uniformly summarized all published GALNS gene variants, thus updating the previous mutation review (published in 2014). In addition, new variants were communicated by seven reference laboratories in Europe, the Middle East, Latin America, Asia, and the United States. All data were analyzed to determine common alleles, geographic distribution, level of homozygosity, and genotype-phenotype correlation. Moreover, variants were classified according to their pathogenicity as suggested by ACMG. Including those previously published, we assembled 446 unique variants, among which 68 were novel, from 1190 subjects (including newborn screening positive subjects). Variants' distribution was missense (65.0%), followed by nonsense (8.1%), splicing (7.2%), small frameshift deletions(del)/insertions(ins) (7.0%), intronic (4.0%), and large del/ins and complex rearrangements (3.8%). Half (50.4%) of the subjects were homozygous, 37.1% were compound heterozygous, and 10.7% had only one variant detected. The novel variants underwent in silico analysis to evaluate their pathogenicity. All variants were submitted to ClinVar (https://www.ncbi.nlm.nih.gov/clinvar/) to make them publicly available. Mutation updates are essential for the correct molecular diagnoses, genetic counseling, prenatal and preimplantation diagnosis, and disease management. |
id |
UFRGS-2_8a38f504cc0df743a5f79a66c508c05f |
---|---|
oai_identifier_str |
oai:www.lume.ufrgs.br:10183/234553 |
network_acronym_str |
UFRGS-2 |
network_name_str |
Repositório Institucional da UFRGS |
repository_id_str |
|
spelling |
Zanetti, AlessandraD'Avanzo, FrancescaAlSayed, M.Facchin, Ana Carolina BrusiusChien, Yin-HsiuGiugliani, RobertoIzzo, EmanuelaKasper David C.Lin, Hsiang-YuLin, Shuan-PeiPollard, Laura MalindaSingh, AkashdeepTonin, RodolfoWood, Tim J.Marrone, AmeliaTomanin, Rosella2022-01-27T04:34:57Z20211098-1004http://hdl.handle.net/10183/234553001136186Mucopolysaccharidosis IVA (MPS IVA, Morquio A syndrome) is a rare autosomal recessive lysosomal storage disorder caused by mutations in the N-acetylgalactosamine-6-sulfatase (GALNS) gene. We collected, analyzed, and uniformly summarized all published GALNS gene variants, thus updating the previous mutation review (published in 2014). In addition, new variants were communicated by seven reference laboratories in Europe, the Middle East, Latin America, Asia, and the United States. All data were analyzed to determine common alleles, geographic distribution, level of homozygosity, and genotype-phenotype correlation. Moreover, variants were classified according to their pathogenicity as suggested by ACMG. Including those previously published, we assembled 446 unique variants, among which 68 were novel, from 1190 subjects (including newborn screening positive subjects). Variants' distribution was missense (65.0%), followed by nonsense (8.1%), splicing (7.2%), small frameshift deletions(del)/insertions(ins) (7.0%), intronic (4.0%), and large del/ins and complex rearrangements (3.8%). Half (50.4%) of the subjects were homozygous, 37.1% were compound heterozygous, and 10.7% had only one variant detected. The novel variants underwent in silico analysis to evaluate their pathogenicity. All variants were submitted to ClinVar (https://www.ncbi.nlm.nih.gov/clinvar/) to make them publicly available. Mutation updates are essential for the correct molecular diagnoses, genetic counseling, prenatal and preimplantation diagnosis, and disease management.application/pdfengHuman mutation. New York. Vol. 42 (2021), p. 1384–1398Mucopolissacaridose IVRevisãoClassificaçãoMutaçãoDoenças por armazenamento dos lisossomosGALNSLysosomal storage disorderMorquio A syndromeMPS IVAMucopolysaccharidosis IVAN-acetylgalactosamine-6-sulfateMolecular basis of mucopolysaccharidosis IVA (Morquio A syndrome) : a review and classification of GALNS gene variants and reporting of 68 novel variantsEstrangeiroinfo:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da UFRGSinstname:Universidade Federal do Rio Grande do Sul (UFRGS)instacron:UFRGSTEXT001136186.pdf.txt001136186.pdf.txtExtracted Texttext/plain67620http://www.lume.ufrgs.br/bitstream/10183/234553/2/001136186.pdf.txtdb74604c83e2fbf9d6234ea83fe0d85aMD52ORIGINAL001136186.pdfTexto completo (inglês)application/pdf2102699http://www.lume.ufrgs.br/bitstream/10183/234553/1/001136186.pdf6b331e87c8c27e2edadca0a7aca6528bMD5110183/2345532022-02-22 05:14:38.219254oai:www.lume.ufrgs.br:10183/234553Repositório InstitucionalPUBhttps://lume.ufrgs.br/oai/requestlume@ufrgs.bropendoar:2022-02-22T08:14:38Repositório Institucional da UFRGS - Universidade Federal do Rio Grande do Sul (UFRGS)false |
dc.title.pt_BR.fl_str_mv |
Molecular basis of mucopolysaccharidosis IVA (Morquio A syndrome) : a review and classification of GALNS gene variants and reporting of 68 novel variants |
title |
Molecular basis of mucopolysaccharidosis IVA (Morquio A syndrome) : a review and classification of GALNS gene variants and reporting of 68 novel variants |
spellingShingle |
Molecular basis of mucopolysaccharidosis IVA (Morquio A syndrome) : a review and classification of GALNS gene variants and reporting of 68 novel variants Zanetti, Alessandra Mucopolissacaridose IV Revisão Classificação Mutação Doenças por armazenamento dos lisossomos GALNS Lysosomal storage disorder Morquio A syndrome MPS IVA Mucopolysaccharidosis IVA N-acetylgalactosamine-6-sulfate |
title_short |
Molecular basis of mucopolysaccharidosis IVA (Morquio A syndrome) : a review and classification of GALNS gene variants and reporting of 68 novel variants |
title_full |
Molecular basis of mucopolysaccharidosis IVA (Morquio A syndrome) : a review and classification of GALNS gene variants and reporting of 68 novel variants |
title_fullStr |
Molecular basis of mucopolysaccharidosis IVA (Morquio A syndrome) : a review and classification of GALNS gene variants and reporting of 68 novel variants |
title_full_unstemmed |
Molecular basis of mucopolysaccharidosis IVA (Morquio A syndrome) : a review and classification of GALNS gene variants and reporting of 68 novel variants |
title_sort |
Molecular basis of mucopolysaccharidosis IVA (Morquio A syndrome) : a review and classification of GALNS gene variants and reporting of 68 novel variants |
author |
Zanetti, Alessandra |
author_facet |
Zanetti, Alessandra D'Avanzo, Francesca AlSayed, M. Facchin, Ana Carolina Brusius Chien, Yin-Hsiu Giugliani, Roberto Izzo, Emanuela Kasper David C. Lin, Hsiang-Yu Lin, Shuan-Pei Pollard, Laura Malinda Singh, Akashdeep Tonin, Rodolfo Wood, Tim J. Marrone, Amelia Tomanin, Rosella |
author_role |
author |
author2 |
D'Avanzo, Francesca AlSayed, M. Facchin, Ana Carolina Brusius Chien, Yin-Hsiu Giugliani, Roberto Izzo, Emanuela Kasper David C. Lin, Hsiang-Yu Lin, Shuan-Pei Pollard, Laura Malinda Singh, Akashdeep Tonin, Rodolfo Wood, Tim J. Marrone, Amelia Tomanin, Rosella |
author2_role |
author author author author author author author author author author author author author author author |
dc.contributor.author.fl_str_mv |
Zanetti, Alessandra D'Avanzo, Francesca AlSayed, M. Facchin, Ana Carolina Brusius Chien, Yin-Hsiu Giugliani, Roberto Izzo, Emanuela Kasper David C. Lin, Hsiang-Yu Lin, Shuan-Pei Pollard, Laura Malinda Singh, Akashdeep Tonin, Rodolfo Wood, Tim J. Marrone, Amelia Tomanin, Rosella |
dc.subject.por.fl_str_mv |
Mucopolissacaridose IV Revisão Classificação Mutação Doenças por armazenamento dos lisossomos |
topic |
Mucopolissacaridose IV Revisão Classificação Mutação Doenças por armazenamento dos lisossomos GALNS Lysosomal storage disorder Morquio A syndrome MPS IVA Mucopolysaccharidosis IVA N-acetylgalactosamine-6-sulfate |
dc.subject.eng.fl_str_mv |
GALNS Lysosomal storage disorder Morquio A syndrome MPS IVA Mucopolysaccharidosis IVA N-acetylgalactosamine-6-sulfate |
description |
Mucopolysaccharidosis IVA (MPS IVA, Morquio A syndrome) is a rare autosomal recessive lysosomal storage disorder caused by mutations in the N-acetylgalactosamine-6-sulfatase (GALNS) gene. We collected, analyzed, and uniformly summarized all published GALNS gene variants, thus updating the previous mutation review (published in 2014). In addition, new variants were communicated by seven reference laboratories in Europe, the Middle East, Latin America, Asia, and the United States. All data were analyzed to determine common alleles, geographic distribution, level of homozygosity, and genotype-phenotype correlation. Moreover, variants were classified according to their pathogenicity as suggested by ACMG. Including those previously published, we assembled 446 unique variants, among which 68 were novel, from 1190 subjects (including newborn screening positive subjects). Variants' distribution was missense (65.0%), followed by nonsense (8.1%), splicing (7.2%), small frameshift deletions(del)/insertions(ins) (7.0%), intronic (4.0%), and large del/ins and complex rearrangements (3.8%). Half (50.4%) of the subjects were homozygous, 37.1% were compound heterozygous, and 10.7% had only one variant detected. The novel variants underwent in silico analysis to evaluate their pathogenicity. All variants were submitted to ClinVar (https://www.ncbi.nlm.nih.gov/clinvar/) to make them publicly available. Mutation updates are essential for the correct molecular diagnoses, genetic counseling, prenatal and preimplantation diagnosis, and disease management. |
publishDate |
2021 |
dc.date.issued.fl_str_mv |
2021 |
dc.date.accessioned.fl_str_mv |
2022-01-27T04:34:57Z |
dc.type.driver.fl_str_mv |
Estrangeiro info:eu-repo/semantics/article |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://hdl.handle.net/10183/234553 |
dc.identifier.issn.pt_BR.fl_str_mv |
1098-1004 |
dc.identifier.nrb.pt_BR.fl_str_mv |
001136186 |
identifier_str_mv |
1098-1004 001136186 |
url |
http://hdl.handle.net/10183/234553 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.ispartof.pt_BR.fl_str_mv |
Human mutation. New York. Vol. 42 (2021), p. 1384–1398 |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
application/pdf |
dc.source.none.fl_str_mv |
reponame:Repositório Institucional da UFRGS instname:Universidade Federal do Rio Grande do Sul (UFRGS) instacron:UFRGS |
instname_str |
Universidade Federal do Rio Grande do Sul (UFRGS) |
instacron_str |
UFRGS |
institution |
UFRGS |
reponame_str |
Repositório Institucional da UFRGS |
collection |
Repositório Institucional da UFRGS |
bitstream.url.fl_str_mv |
http://www.lume.ufrgs.br/bitstream/10183/234553/2/001136186.pdf.txt http://www.lume.ufrgs.br/bitstream/10183/234553/1/001136186.pdf |
bitstream.checksum.fl_str_mv |
db74604c83e2fbf9d6234ea83fe0d85a 6b331e87c8c27e2edadca0a7aca6528b |
bitstream.checksumAlgorithm.fl_str_mv |
MD5 MD5 |
repository.name.fl_str_mv |
Repositório Institucional da UFRGS - Universidade Federal do Rio Grande do Sul (UFRGS) |
repository.mail.fl_str_mv |
lume@ufrgs.br |
_version_ |
1834472538998046720 |