Distribuições de probabilidade para análise de dados de contagem de parasitos em bovinos

Bibliographic Details
Main Author: Andresa Eva Melo de Araujo
Publication Date: 2019
Format: Master thesis
Language: por
Source: Repositório Institucional da UFMG
Download full: http://hdl.handle.net/1843/32485
Summary: Traits of resistance against parasites are considered as selection criteria in genetic improvement programs of cattle due to the economic impact associated with parasitism. In general, resistance traits are studied through count records of ticks, parasite eggs and oocysts and those counts are analyzed through different probability distributions. We aimed to identify whether there would be any differences in the estimation of variance and in the selection and ranking of animals for parasite counts between Poisson (P), zero-inflated Poisson (ZIP), negative binomial (NB), and zero-inflated negative binomial (ZINB) distributions. We analyzed 7,858 tick counts and 7,144 counts of both gastrointestinal nematodes (GIN) and Eimeria spp. through Bayesian inference. The distribution which best fitted the data was Poisson. Estimates of permanent environmental and contemporary group variances for tick and Eimeria spp. counts, and also of additive genetic and permanent environmental variances for NGI counts were similar between P and ZIP distributions. Between NB and ZINB distributions, all variances showed some similarity. In the animal selection, the similarity of individuals equally selected between P and ZIP showed a variation of 50-94% for ticks, 67-85% for GIN and 29-50% for Eimeria spp. Between NB e ZINB, this similarity was always near 100%. Neither NB nor ZINB showed any differences in animal ordering at the bull ranking, although in the other distributions the observed changes were not significant. Our results indicate that there are differences in the estimates of variance obtained between P, ZIP, NB and ZINB distributions. For practical purposes, the utilization of P, NB and ZINB distributions will not interfere in animal selection and ranking.
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spelling Distribuições de probabilidade para análise de dados de contagem de parasitos em bovinosProbability distributions for analysing parasite count data in cattleInferência BayesianaPoissonBinomial NegativaTraits of resistance against parasites are considered as selection criteria in genetic improvement programs of cattle due to the economic impact associated with parasitism. In general, resistance traits are studied through count records of ticks, parasite eggs and oocysts and those counts are analyzed through different probability distributions. We aimed to identify whether there would be any differences in the estimation of variance and in the selection and ranking of animals for parasite counts between Poisson (P), zero-inflated Poisson (ZIP), negative binomial (NB), and zero-inflated negative binomial (ZINB) distributions. We analyzed 7,858 tick counts and 7,144 counts of both gastrointestinal nematodes (GIN) and Eimeria spp. through Bayesian inference. The distribution which best fitted the data was Poisson. Estimates of permanent environmental and contemporary group variances for tick and Eimeria spp. counts, and also of additive genetic and permanent environmental variances for NGI counts were similar between P and ZIP distributions. Between NB and ZINB distributions, all variances showed some similarity. In the animal selection, the similarity of individuals equally selected between P and ZIP showed a variation of 50-94% for ticks, 67-85% for GIN and 29-50% for Eimeria spp. Between NB e ZINB, this similarity was always near 100%. Neither NB nor ZINB showed any differences in animal ordering at the bull ranking, although in the other distributions the observed changes were not significant. Our results indicate that there are differences in the estimates of variance obtained between P, ZIP, NB and ZINB distributions. For practical purposes, the utilization of P, NB and ZINB distributions will not interfere in animal selection and ranking.Características de resistência aos parasitos são consideradas critérios de seleção em programas de melhoramento genético de bovinos, devido ao impacto econômico do parasitismo, por meio de registros de contagens de carrapatos, ovos e oocistos analisados a partir de diferentes distribuições de probabilidade. Objetivou-se identificar se existem diferenças nas estimativas de variância, seleção e classificação dos animais para contagens de parasitos analisadas pelas distribuições Poisson (P), Poisson inflacionada de zero (ZIP), binomial negativa (NB) e binomial negativa inflacionada de zero (ZINB). Foram analisadas 7.858 contagens de carrapatos e 7.144 contagens de nematódeos gastrointestinais (NGI) e Eimeria spp., via inferência Bayesiana. A distribuição que melhor se ajustou aos dados foi a Poisson. Estimativas de variância de ambiente permanente e grupo de contemporâneo, para contagens de carrapatos e Eimeria spp., e de variância genética aditiva e de ambiente permanente, para contagem de NGI, foram semelhantes entre P e ZIP. Entre NB e ZINB, houve semelhança em todas as variâncias. Na seleção, a similaridade de animais selecionados entre P e ZIP variou de 50 a 94% para carrapatos, 67 a 85% para NGI e 29 a 50% para Eimeria spp. Entre NB e ZINB, essa similaridade sempre foi próxima a 100%. Na classificação dos touros, as distribuições NB e ZINB não apresentaram diferenças de ordenação enquanto, nas demais distribuições, as alterações não foram significativas. Os resultados indicam que existem diferenças nas estimativas de variância obtidas entre as distribuições P e ZIP e NB e ZINB. Na prática, a utilização das distribuições P, NB e ZINB não interfere na seleção e classificação dos animais.CNPq - Conselho Nacional de Desenvolvimento Científico e TecnológicoUniversidade Federal de Minas GeraisBrasilVET - DEPARTAMENTO DE ZOOTECNIAPrograma de Pós-Graduação em ZootecniaUFMGFabio Luiz Buranelo Toralhttp://lattes.cnpq.br/4917268846861677Angela Maria Quintão LanaJoão Paulo Amaral HaddadAndresa Eva Melo de Araujo2020-02-12T16:37:56Z2020-02-12T16:37:56Z2019-02-27info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/masterThesisapplication/pdfhttp://hdl.handle.net/1843/32485porinfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da UFMGinstname:Universidade Federal de Minas Gerais (UFMG)instacron:UFMG2020-02-13T06:32:17Zoai:repositorio.ufmg.br:1843/32485Repositório InstitucionalPUBhttps://repositorio.ufmg.br/oairepositorio@ufmg.bropendoar:2020-02-13T06:32:17Repositório Institucional da UFMG - Universidade Federal de Minas Gerais (UFMG)false
dc.title.none.fl_str_mv Distribuições de probabilidade para análise de dados de contagem de parasitos em bovinos
Probability distributions for analysing parasite count data in cattle
title Distribuições de probabilidade para análise de dados de contagem de parasitos em bovinos
spellingShingle Distribuições de probabilidade para análise de dados de contagem de parasitos em bovinos
Andresa Eva Melo de Araujo
Inferência Bayesiana
Poisson
Binomial Negativa
title_short Distribuições de probabilidade para análise de dados de contagem de parasitos em bovinos
title_full Distribuições de probabilidade para análise de dados de contagem de parasitos em bovinos
title_fullStr Distribuições de probabilidade para análise de dados de contagem de parasitos em bovinos
title_full_unstemmed Distribuições de probabilidade para análise de dados de contagem de parasitos em bovinos
title_sort Distribuições de probabilidade para análise de dados de contagem de parasitos em bovinos
author Andresa Eva Melo de Araujo
author_facet Andresa Eva Melo de Araujo
author_role author
dc.contributor.none.fl_str_mv Fabio Luiz Buranelo Toral
http://lattes.cnpq.br/4917268846861677
Angela Maria Quintão Lana
João Paulo Amaral Haddad
dc.contributor.author.fl_str_mv Andresa Eva Melo de Araujo
dc.subject.por.fl_str_mv Inferência Bayesiana
Poisson
Binomial Negativa
topic Inferência Bayesiana
Poisson
Binomial Negativa
description Traits of resistance against parasites are considered as selection criteria in genetic improvement programs of cattle due to the economic impact associated with parasitism. In general, resistance traits are studied through count records of ticks, parasite eggs and oocysts and those counts are analyzed through different probability distributions. We aimed to identify whether there would be any differences in the estimation of variance and in the selection and ranking of animals for parasite counts between Poisson (P), zero-inflated Poisson (ZIP), negative binomial (NB), and zero-inflated negative binomial (ZINB) distributions. We analyzed 7,858 tick counts and 7,144 counts of both gastrointestinal nematodes (GIN) and Eimeria spp. through Bayesian inference. The distribution which best fitted the data was Poisson. Estimates of permanent environmental and contemporary group variances for tick and Eimeria spp. counts, and also of additive genetic and permanent environmental variances for NGI counts were similar between P and ZIP distributions. Between NB and ZINB distributions, all variances showed some similarity. In the animal selection, the similarity of individuals equally selected between P and ZIP showed a variation of 50-94% for ticks, 67-85% for GIN and 29-50% for Eimeria spp. Between NB e ZINB, this similarity was always near 100%. Neither NB nor ZINB showed any differences in animal ordering at the bull ranking, although in the other distributions the observed changes were not significant. Our results indicate that there are differences in the estimates of variance obtained between P, ZIP, NB and ZINB distributions. For practical purposes, the utilization of P, NB and ZINB distributions will not interfere in animal selection and ranking.
publishDate 2019
dc.date.none.fl_str_mv 2019-02-27
2020-02-12T16:37:56Z
2020-02-12T16:37:56Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/masterThesis
format masterThesis
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://hdl.handle.net/1843/32485
url http://hdl.handle.net/1843/32485
dc.language.iso.fl_str_mv por
language por
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Universidade Federal de Minas Gerais
Brasil
VET - DEPARTAMENTO DE ZOOTECNIA
Programa de Pós-Graduação em Zootecnia
UFMG
publisher.none.fl_str_mv Universidade Federal de Minas Gerais
Brasil
VET - DEPARTAMENTO DE ZOOTECNIA
Programa de Pós-Graduação em Zootecnia
UFMG
dc.source.none.fl_str_mv reponame:Repositório Institucional da UFMG
instname:Universidade Federal de Minas Gerais (UFMG)
instacron:UFMG
instname_str Universidade Federal de Minas Gerais (UFMG)
instacron_str UFMG
institution UFMG
reponame_str Repositório Institucional da UFMG
collection Repositório Institucional da UFMG
repository.name.fl_str_mv Repositório Institucional da UFMG - Universidade Federal de Minas Gerais (UFMG)
repository.mail.fl_str_mv repositorio@ufmg.br
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