Using DNA barcodes to identify forensically important species of Diptera in Espírito Santo State, Brazil

Bibliographic Details
Main Author: Oliveira,Pablo Viana
Publication Date: 2017
Other Authors: Matos,Natan Silva, Klippel,Angélica Hollunder, Oliveira-Costa,Janyra, Careta,Francisco de Paula, Paneto,Greiciane Gaburro
Format: Article
Language: por
Source: Brazilian Archives of Biology and Technology
Download full: http://old.scielo.br/scielo.php?script=sci_arttext&pid=S1516-89132017000100403
Summary: ABSTRACT Accurate insect specimen identification is usually a crucial first step in a forensic entomological analysis. It is traditionally done by morphological classification using identification keys. However, due to sensibility limitations in the identification of animal species based only on their morphology, new methods have been developed, including species identification by DNA barcodes. The objective of this study was to identify forensically important species of Diptera in Espirito Santo state using DNA barcodes. For this, adult flies were collected in Espirito Santo, Southeast Region of Brazil. After DNA extraction, COI gene was amplified and sequenced. All sequences were matched to BOLD platform and alternatively to GenBank MegaBLAST. As result, 281 adult flies were collected and identified morphologically. From these, 36% of samples were classified as Calliphoridae, 34% of Muscidae and 30% of Sarcophagidae. Approximately 10% of all collected samples were analyzes by DNA. It was possible to identify only 35.7% of tested samples, probably due to lack of samples deposited in databases. Therefore, more efforts should be made to deposit a greater variety of dipterous in databases to allow the use of this technique in forensic routine, especially in BOLD.
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spelling Using DNA barcodes to identify forensically important species of Diptera in Espírito Santo State, BrazilEntomologyCOIBOLDForensicFliesABSTRACT Accurate insect specimen identification is usually a crucial first step in a forensic entomological analysis. It is traditionally done by morphological classification using identification keys. However, due to sensibility limitations in the identification of animal species based only on their morphology, new methods have been developed, including species identification by DNA barcodes. The objective of this study was to identify forensically important species of Diptera in Espirito Santo state using DNA barcodes. For this, adult flies were collected in Espirito Santo, Southeast Region of Brazil. After DNA extraction, COI gene was amplified and sequenced. All sequences were matched to BOLD platform and alternatively to GenBank MegaBLAST. As result, 281 adult flies were collected and identified morphologically. From these, 36% of samples were classified as Calliphoridae, 34% of Muscidae and 30% of Sarcophagidae. Approximately 10% of all collected samples were analyzes by DNA. It was possible to identify only 35.7% of tested samples, probably due to lack of samples deposited in databases. Therefore, more efforts should be made to deposit a greater variety of dipterous in databases to allow the use of this technique in forensic routine, especially in BOLD.Instituto de Tecnologia do Paraná - Tecpar2017-01-01info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersiontext/htmlhttp://old.scielo.br/scielo.php?script=sci_arttext&pid=S1516-89132017000100403Brazilian Archives of Biology and Technology v.60 2017reponame:Brazilian Archives of Biology and Technologyinstname:Instituto de Tecnologia do Paraná (Tecpar)instacron:TECPAR10.1590/1678-4324-2017160106info:eu-repo/semantics/openAccessOliveira,Pablo VianaMatos,Natan SilvaKlippel,Angélica HollunderOliveira-Costa,JanyraCareta,Francisco de PaulaPaneto,Greiciane Gaburropor2020-11-24T00:00:00Zoai:scielo:S1516-89132017000100403Revistahttps://www.scielo.br/j/babt/https://old.scielo.br/oai/scielo-oai.phpbabt@tecpar.br||babt@tecpar.br1678-43241516-8913opendoar:2020-11-24T00:00Brazilian Archives of Biology and Technology - Instituto de Tecnologia do Paraná (Tecpar)false
dc.title.none.fl_str_mv Using DNA barcodes to identify forensically important species of Diptera in Espírito Santo State, Brazil
title Using DNA barcodes to identify forensically important species of Diptera in Espírito Santo State, Brazil
spellingShingle Using DNA barcodes to identify forensically important species of Diptera in Espírito Santo State, Brazil
Oliveira,Pablo Viana
Entomology
COI
BOLD
Forensic
Flies
title_short Using DNA barcodes to identify forensically important species of Diptera in Espírito Santo State, Brazil
title_full Using DNA barcodes to identify forensically important species of Diptera in Espírito Santo State, Brazil
title_fullStr Using DNA barcodes to identify forensically important species of Diptera in Espírito Santo State, Brazil
title_full_unstemmed Using DNA barcodes to identify forensically important species of Diptera in Espírito Santo State, Brazil
title_sort Using DNA barcodes to identify forensically important species of Diptera in Espírito Santo State, Brazil
author Oliveira,Pablo Viana
author_facet Oliveira,Pablo Viana
Matos,Natan Silva
Klippel,Angélica Hollunder
Oliveira-Costa,Janyra
Careta,Francisco de Paula
Paneto,Greiciane Gaburro
author_role author
author2 Matos,Natan Silva
Klippel,Angélica Hollunder
Oliveira-Costa,Janyra
Careta,Francisco de Paula
Paneto,Greiciane Gaburro
author2_role author
author
author
author
author
dc.contributor.author.fl_str_mv Oliveira,Pablo Viana
Matos,Natan Silva
Klippel,Angélica Hollunder
Oliveira-Costa,Janyra
Careta,Francisco de Paula
Paneto,Greiciane Gaburro
dc.subject.por.fl_str_mv Entomology
COI
BOLD
Forensic
Flies
topic Entomology
COI
BOLD
Forensic
Flies
description ABSTRACT Accurate insect specimen identification is usually a crucial first step in a forensic entomological analysis. It is traditionally done by morphological classification using identification keys. However, due to sensibility limitations in the identification of animal species based only on their morphology, new methods have been developed, including species identification by DNA barcodes. The objective of this study was to identify forensically important species of Diptera in Espirito Santo state using DNA barcodes. For this, adult flies were collected in Espirito Santo, Southeast Region of Brazil. After DNA extraction, COI gene was amplified and sequenced. All sequences were matched to BOLD platform and alternatively to GenBank MegaBLAST. As result, 281 adult flies were collected and identified morphologically. From these, 36% of samples were classified as Calliphoridae, 34% of Muscidae and 30% of Sarcophagidae. Approximately 10% of all collected samples were analyzes by DNA. It was possible to identify only 35.7% of tested samples, probably due to lack of samples deposited in databases. Therefore, more efforts should be made to deposit a greater variety of dipterous in databases to allow the use of this technique in forensic routine, especially in BOLD.
publishDate 2017
dc.date.none.fl_str_mv 2017-01-01
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
format article
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dc.identifier.uri.fl_str_mv http://old.scielo.br/scielo.php?script=sci_arttext&pid=S1516-89132017000100403
url http://old.scielo.br/scielo.php?script=sci_arttext&pid=S1516-89132017000100403
dc.language.iso.fl_str_mv por
language por
dc.relation.none.fl_str_mv 10.1590/1678-4324-2017160106
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv text/html
dc.publisher.none.fl_str_mv Instituto de Tecnologia do Paraná - Tecpar
publisher.none.fl_str_mv Instituto de Tecnologia do Paraná - Tecpar
dc.source.none.fl_str_mv Brazilian Archives of Biology and Technology v.60 2017
reponame:Brazilian Archives of Biology and Technology
instname:Instituto de Tecnologia do Paraná (Tecpar)
instacron:TECPAR
instname_str Instituto de Tecnologia do Paraná (Tecpar)
instacron_str TECPAR
institution TECPAR
reponame_str Brazilian Archives of Biology and Technology
collection Brazilian Archives of Biology and Technology
repository.name.fl_str_mv Brazilian Archives of Biology and Technology - Instituto de Tecnologia do Paraná (Tecpar)
repository.mail.fl_str_mv babt@tecpar.br||babt@tecpar.br
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