Estudos de sistemática molecular e de biogeografia histórica do bagre de água doce Pseudoplatystoma Bleeker, 1862 (Pimelodidae) na América do Sul

Bibliographic Details
Main Author: Costa, Luis Fernando Carvalho
Publication Date: 2010
Format: Doctoral thesis
Language: por
Source: Repositório Institucional da UFSCAR
Download full: https://repositorio.ufscar.br/handle/20.500.14289/1669
Summary: The catfishes of the Pseudoplatystoma genus are carnivore pimelodids, migratory and important for fisheries in all major river basins from South America. Only three species were recognized for the genus (P. corruscans, P. fasciatum and P. tigrinum), but a new revision raised to eight the number of species (P. fasciatum, P. punctifer, P. orinocoense, P. magdaleniatum, P. reticulatum, P. tigrinum, P. metaense and P. corruscans). Recently, Pseudoplatystoma was the subject of a molecular phylogeny study based on mitochondrial markers, where monophyletic clades where found for P. tigrinum, P. corruscans, P. reticulatum+P. punctifer+P. fasciatum and P. magdaleniatum. Despite these advances on the knowledge of the evolutionary history and systematics of the group, there are still questions to be answered. Thus, this study aimed a molecular phylogenetic analysis on Pseudoplatystoma to try to answer pendant questions about the systematics and taxonomy of the group, and propose a scenario for its diversification history in the geographic area of South America. In order to do this, we employed the mitochondrial Cytochrome b gene and introns from Rag1 and S7 genes, whose phylogenies were estimated by Maximum Likelihood using TREEFINDER software. Nodes were dated on BEAST software. It was shown that some Pseudoplatystoma species, resulting from the last revision of the genus, do not correspond to monophyletic groups or they were not significantly supported clades in all trees. The only monophyletic species in all markers were P. magdaleniatum and P. corruscans. Pseudoplatystoma orinocoense was a monophyletic lineage only on Cytochrome b. In light of these results, it is suggested that the old terminology P. fasciatum to be revalidated for the taxa here defined as P. fasciatum clade: P. punctifer (Amazon, Maranhão, Tocantins-Araguaia), P. reticulatum (Paraná-Paraguay) and P. fasciatum (Guyanas). Under the same rationale, P. tigrinum should be revalidated for Orinoco, given the paraphyletism of P. metaense. However, some cases of nonmonophyletic species in one or more markers may be due to incomplete lineage sorting, although this possibility needs to be investigated using other markers. The history of diversification of Pseudoplatystoma was the result of millions of years of evolution and and it was strongly influenced by the evolution of the South America geographical matrix. The biogeographic study allowed us to identify and date the important diversification events for the genus and relate them to the historical geomorphological and/or climate changes reported for South America, which would be the primary diversification causes for other freshwater fishes from the continent.
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spelling Costa, Luis Fernando CarvalhoGaletti Júnior, Pedro Manoelhttp://lattes.cnpq.br/7398754661670478http://lattes.cnpq.br/4800779539865670a164a772-b78a-462f-b0d9-9554112703682016-06-02T19:29:23Z2010-06-102016-06-02T19:29:23Z2010-03-26COSTA, Luis Fernando Carvalho. Estudos de sistemática molecular e de biogeografia histórica do bagre de água doce Pseudoplatystoma Bleeker, 1862 (Pimelodidae) na América do Sul. 2010. 151 f. Tese (Doutorado em Ciências Biológicas) - Universidade Federal de São Carlos, São Carlos, 2010.https://repositorio.ufscar.br/handle/20.500.14289/1669The catfishes of the Pseudoplatystoma genus are carnivore pimelodids, migratory and important for fisheries in all major river basins from South America. Only three species were recognized for the genus (P. corruscans, P. fasciatum and P. tigrinum), but a new revision raised to eight the number of species (P. fasciatum, P. punctifer, P. orinocoense, P. magdaleniatum, P. reticulatum, P. tigrinum, P. metaense and P. corruscans). Recently, Pseudoplatystoma was the subject of a molecular phylogeny study based on mitochondrial markers, where monophyletic clades where found for P. tigrinum, P. corruscans, P. reticulatum+P. punctifer+P. fasciatum and P. magdaleniatum. Despite these advances on the knowledge of the evolutionary history and systematics of the group, there are still questions to be answered. Thus, this study aimed a molecular phylogenetic analysis on Pseudoplatystoma to try to answer pendant questions about the systematics and taxonomy of the group, and propose a scenario for its diversification history in the geographic area of South America. In order to do this, we employed the mitochondrial Cytochrome b gene and introns from Rag1 and S7 genes, whose phylogenies were estimated by Maximum Likelihood using TREEFINDER software. Nodes were dated on BEAST software. It was shown that some Pseudoplatystoma species, resulting from the last revision of the genus, do not correspond to monophyletic groups or they were not significantly supported clades in all trees. The only monophyletic species in all markers were P. magdaleniatum and P. corruscans. Pseudoplatystoma orinocoense was a monophyletic lineage only on Cytochrome b. In light of these results, it is suggested that the old terminology P. fasciatum to be revalidated for the taxa here defined as P. fasciatum clade: P. punctifer (Amazon, Maranhão, Tocantins-Araguaia), P. reticulatum (Paraná-Paraguay) and P. fasciatum (Guyanas). Under the same rationale, P. tigrinum should be revalidated for Orinoco, given the paraphyletism of P. metaense. However, some cases of nonmonophyletic species in one or more markers may be due to incomplete lineage sorting, although this possibility needs to be investigated using other markers. The history of diversification of Pseudoplatystoma was the result of millions of years of evolution and and it was strongly influenced by the evolution of the South America geographical matrix. The biogeographic study allowed us to identify and date the important diversification events for the genus and relate them to the historical geomorphological and/or climate changes reported for South America, which would be the primary diversification causes for other freshwater fishes from the continent.Os bagres do gênero Pseudoplatystoma são pimelodídeos carnívoros, migradores e de importância pesqueira em todas as grandes bacias hidrográficas da América do Sul. Apenas três espécies eram reconhecidas para o gênero (P. corruscans, P. fasciatum e P. tigrinum), mas uma nova revisão elevou para oito o número de espécies (P. fasciatum, P. punctifer, P. orinocoense, P. magdaleniatum, P. reticulatum, P. tigrinum, P. metaense e P. corruscans). Recentemente, Pseudoplatystoma foi alvo de um de estudo de filogenia molecular com marcadores mitocondriais, onde foram encontrados clados monofiléticos para P. tigrinum, P. corruscans, P. reticulatum+P. punctifer+P. fasciatum e P. magdaleniatum. Apesar desses avanços no conhecimento da história evolutiva e da sistemática do grupo, ainda restam questões a serem respondidas. Dessa forma, o presente estudo objetivou uma análise filogenética molecular em Pseudoplatystoma para tentar responder questões pendentes sobre a sistemática e taxonomia do grupo, bem como propor um cenário para sua história de diversificação no espaço geográfico da América do Sul. Para isso, foram empregados o gene mitocondrial do Citocromo b e íntrons dos genes Rag1 e S7, cujas filogenias foram estimadas por Máxima Verossimilhança no programa TREEFINDER. Os nós das filogenias foram datados no programa BEAST. Foi demonstrado que algumas espécies de Pseudoplatystoma, resultantes da última revisão do gênero, não correspondem a grupos monofiléticos ou não tiveram clados significativamente sustentados em todas as árvores. As únicas espécies monofiléticas em todos os marcadores foram P. magdaleniatum e P. corruscans. Pseudoplatystoma orinocoense só foi uma linhagem monofilética no Citocromo b. À luz desses resultados, sugere-se que a antiga terminologia P. fasciatum seja revalidada para os táxons do clado aqui definido como clado P. fasciatum: P. punctifer (Amazonas, Maranhão, Tocantins-Araguaia), P. reticulatum (Paraná-Paraguai) e P. fasciatum (Guianas). Sob a mesma racionalidade, P. tigrinum deveria ser revalidado para o Orinoco, dado o parafiletismo de P. metaense. Entretanto, alguns dos casos de espécies não-monofiléticas em um ou mais marcadores podem ser devidos à separação incompleta de linhagens, embora essa possibilidade necessite ser investigada com o uso de outros marcadores. A história da diversificação de Pseudoplatystoma foi resultado de milhões de anos de evolução e fortemente influenciada pela evolução da matriz geográfica Sul-Americana. O estudo biogeográfico nos permitiu identificar e datar os eventos de diversificação importantes para o gênero e relacioná-los às mudanças geomorfológicas e/ou climáticas históricas conhecidas para a América dos Sul, que seriam as causas primárias de diversificação de outros peixes de água doce do continente.Universidade Federal de Minas Geraisapplication/pdfporUniversidade Federal de São CarlosPrograma de Pós-Graduação em Ecologia e Recursos Naturais - PPGERNUFSCarBRGenética animalFilogeniaBiogeografiaSistemáticaPeixesNeotropicalBagresmtDNAnDNAIntronsNeotropicalPhylogenyCatfishmtDNAnDNAIntronsBiogeographyMolecular systematicsCIENCIAS BIOLOGICAS::ECOLOGIAEstudos de sistemática molecular e de biogeografia histórica do bagre de água doce Pseudoplatystoma Bleeker, 1862 (Pimelodidae) na América do Sulinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/doctoralThesis21591697-d537-499e-8a95-46132103682einfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da UFSCARinstname:Universidade Federal de São Carlos (UFSCAR)instacron:UFSCARTEXT3030.pdf.txt3030.pdf.txtExtracted texttext/plain102651https://repositorio.ufscar.br/bitstreams/39f96be0-bc7d-463a-9217-fa9eede74db1/download0f7132f31a86ae8e2ddb30bea24c777eMD53falseAnonymousREADORIGINAL3030.pdfapplication/pdf2014938https://repositorio.ufscar.br/bitstreams/ff122faf-df85-4cdd-868a-c4f014dfd340/downloadb6d8f7597811d1909e335b6facc588b7MD51trueAnonymousREADTHUMBNAIL3030.pdf.jpg3030.pdf.jpgIM Thumbnailimage/jpeg8120https://repositorio.ufscar.br/bitstreams/028294a8-a4bf-4293-8a2a-d029e8d4586d/download2a2c03926b80162afb4a99bfe4627e2eMD52falseAnonymousREAD20.500.14289/16692025-02-06 03:57:47.215open.accessoai:repositorio.ufscar.br:20.500.14289/1669https://repositorio.ufscar.brRepositório InstitucionalPUBhttps://repositorio.ufscar.br/oai/requestrepositorio.sibi@ufscar.bropendoar:43222025-02-06T06:57:47Repositório Institucional da UFSCAR - Universidade Federal de São Carlos (UFSCAR)false
dc.title.por.fl_str_mv Estudos de sistemática molecular e de biogeografia histórica do bagre de água doce Pseudoplatystoma Bleeker, 1862 (Pimelodidae) na América do Sul
title Estudos de sistemática molecular e de biogeografia histórica do bagre de água doce Pseudoplatystoma Bleeker, 1862 (Pimelodidae) na América do Sul
spellingShingle Estudos de sistemática molecular e de biogeografia histórica do bagre de água doce Pseudoplatystoma Bleeker, 1862 (Pimelodidae) na América do Sul
Costa, Luis Fernando Carvalho
Genética animal
Filogenia
Biogeografia
Sistemática
Peixes
Neotropical
Bagres
mtDNA
nDNA
Introns
Neotropical
Phylogeny
Catfish
mtDNA
nDNA
Introns
Biogeography
Molecular systematics
CIENCIAS BIOLOGICAS::ECOLOGIA
title_short Estudos de sistemática molecular e de biogeografia histórica do bagre de água doce Pseudoplatystoma Bleeker, 1862 (Pimelodidae) na América do Sul
title_full Estudos de sistemática molecular e de biogeografia histórica do bagre de água doce Pseudoplatystoma Bleeker, 1862 (Pimelodidae) na América do Sul
title_fullStr Estudos de sistemática molecular e de biogeografia histórica do bagre de água doce Pseudoplatystoma Bleeker, 1862 (Pimelodidae) na América do Sul
title_full_unstemmed Estudos de sistemática molecular e de biogeografia histórica do bagre de água doce Pseudoplatystoma Bleeker, 1862 (Pimelodidae) na América do Sul
title_sort Estudos de sistemática molecular e de biogeografia histórica do bagre de água doce Pseudoplatystoma Bleeker, 1862 (Pimelodidae) na América do Sul
author Costa, Luis Fernando Carvalho
author_facet Costa, Luis Fernando Carvalho
author_role author
dc.contributor.authorlattes.por.fl_str_mv http://lattes.cnpq.br/4800779539865670
dc.contributor.author.fl_str_mv Costa, Luis Fernando Carvalho
dc.contributor.advisor1.fl_str_mv Galetti Júnior, Pedro Manoel
dc.contributor.advisor1Lattes.fl_str_mv http://lattes.cnpq.br/7398754661670478
dc.contributor.authorID.fl_str_mv a164a772-b78a-462f-b0d9-955411270368
contributor_str_mv Galetti Júnior, Pedro Manoel
dc.subject.por.fl_str_mv Genética animal
Filogenia
Biogeografia
Sistemática
Peixes
Neotropical
Bagres
mtDNA
nDNA
Introns
topic Genética animal
Filogenia
Biogeografia
Sistemática
Peixes
Neotropical
Bagres
mtDNA
nDNA
Introns
Neotropical
Phylogeny
Catfish
mtDNA
nDNA
Introns
Biogeography
Molecular systematics
CIENCIAS BIOLOGICAS::ECOLOGIA
dc.subject.eng.fl_str_mv Neotropical
Phylogeny
Catfish
mtDNA
nDNA
Introns
Biogeography
Molecular systematics
dc.subject.cnpq.fl_str_mv CIENCIAS BIOLOGICAS::ECOLOGIA
description The catfishes of the Pseudoplatystoma genus are carnivore pimelodids, migratory and important for fisheries in all major river basins from South America. Only three species were recognized for the genus (P. corruscans, P. fasciatum and P. tigrinum), but a new revision raised to eight the number of species (P. fasciatum, P. punctifer, P. orinocoense, P. magdaleniatum, P. reticulatum, P. tigrinum, P. metaense and P. corruscans). Recently, Pseudoplatystoma was the subject of a molecular phylogeny study based on mitochondrial markers, where monophyletic clades where found for P. tigrinum, P. corruscans, P. reticulatum+P. punctifer+P. fasciatum and P. magdaleniatum. Despite these advances on the knowledge of the evolutionary history and systematics of the group, there are still questions to be answered. Thus, this study aimed a molecular phylogenetic analysis on Pseudoplatystoma to try to answer pendant questions about the systematics and taxonomy of the group, and propose a scenario for its diversification history in the geographic area of South America. In order to do this, we employed the mitochondrial Cytochrome b gene and introns from Rag1 and S7 genes, whose phylogenies were estimated by Maximum Likelihood using TREEFINDER software. Nodes were dated on BEAST software. It was shown that some Pseudoplatystoma species, resulting from the last revision of the genus, do not correspond to monophyletic groups or they were not significantly supported clades in all trees. The only monophyletic species in all markers were P. magdaleniatum and P. corruscans. Pseudoplatystoma orinocoense was a monophyletic lineage only on Cytochrome b. In light of these results, it is suggested that the old terminology P. fasciatum to be revalidated for the taxa here defined as P. fasciatum clade: P. punctifer (Amazon, Maranhão, Tocantins-Araguaia), P. reticulatum (Paraná-Paraguay) and P. fasciatum (Guyanas). Under the same rationale, P. tigrinum should be revalidated for Orinoco, given the paraphyletism of P. metaense. However, some cases of nonmonophyletic species in one or more markers may be due to incomplete lineage sorting, although this possibility needs to be investigated using other markers. The history of diversification of Pseudoplatystoma was the result of millions of years of evolution and and it was strongly influenced by the evolution of the South America geographical matrix. The biogeographic study allowed us to identify and date the important diversification events for the genus and relate them to the historical geomorphological and/or climate changes reported for South America, which would be the primary diversification causes for other freshwater fishes from the continent.
publishDate 2010
dc.date.available.fl_str_mv 2010-06-10
2016-06-02T19:29:23Z
dc.date.issued.fl_str_mv 2010-03-26
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dc.identifier.citation.fl_str_mv COSTA, Luis Fernando Carvalho. Estudos de sistemática molecular e de biogeografia histórica do bagre de água doce Pseudoplatystoma Bleeker, 1862 (Pimelodidae) na América do Sul. 2010. 151 f. Tese (Doutorado em Ciências Biológicas) - Universidade Federal de São Carlos, São Carlos, 2010.
dc.identifier.uri.fl_str_mv https://repositorio.ufscar.br/handle/20.500.14289/1669
identifier_str_mv COSTA, Luis Fernando Carvalho. Estudos de sistemática molecular e de biogeografia histórica do bagre de água doce Pseudoplatystoma Bleeker, 1862 (Pimelodidae) na América do Sul. 2010. 151 f. Tese (Doutorado em Ciências Biológicas) - Universidade Federal de São Carlos, São Carlos, 2010.
url https://repositorio.ufscar.br/handle/20.500.14289/1669
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