A de novo paradigm for male infertility

Detalhes bibliográficos
Autor(a) principal: Oud, M.S.
Data de Publicação: 2022
Outros Autores: Smits, R.M., Smith, H.E., Mastrorosa, F.K., Holt, G.S., Houston, B.J., de Vries, P.F., Alobaidi, B.K.S., Batty, L.E., Ismail, H., Greenwood, J., Sheth, H., Mikulasova, A., Astuti, G.D.N., Gilissen, C., McEleny, K., Turner, H., Coxhead, J., Cockell, S., Braat, D.D.M., Fleischer, K., D’Hauwers, K.W.M., Schaafsma, E., Conrad, Donald F., Nagirnaja, Liina, Aston, Kenneth I., Carrell, Douglas T., Hotaling, James M., Jenkins, Timothy G., McLachlan, Rob, O’Bryan, Moira K., Schlegel, Peter N., Eisenberg, Michael L., Sandlow, Jay I., Jungheim, Emily S., Omurtag, Kenan R., Lopes, Alexandra M., Seixas, Susana, Carvalho, Filipa, Fernandes, Susana, Barros, Alberto, Gonçalves, João, Caetano, Iris, Pinto, Graça, Correia, Sónia, Laan, Maris, Punab, Margus, Meyts, Ewa Rajpert-De, Jørgensen, Niels, Almstrup, Kristian, Krausz, Csilla G., Jarvi, Keith A., Nagirnaja, L., Conrad, D.F., Friedrich, C., Kliesch, S., Aston, K.I., Riera-Escamilla, A., Krausz, C., Gonzaga-Jauregui, C., Santibanez-Koref, M., Elliott, D. J., Vissers, L.E.L.M., Tüttelmann, F., O’Bryan, M.K., Ramos, L., Xavier, M.J., van der Heijden, G.W., Veltman, J.A.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositórios Científicos de Acesso Aberto de Portugal (RCAAP)
Texto Completo: http://hdl.handle.net/10400.18/8497
Resumo: De novo mutations are known to play a prominent role in sporadic disorders with reduced fitness. We hypothesize that de novo mutations play an important role in severe male infertility and explain a portion of the genetic causes of this understudied disorder. To test this hypothesis, we utilize trio-based exome sequencing in a cohort of 185 infertile males and their unaffected parents. Following a systematic analysis, 29 of 145 rare (MAF < 0.1%) protein-altering de novo mutations are classified as possibly causative of the male infertility phenotype. We observed a significant enrichment of loss-of-function de novo mutations in loss-of-function-intolerant genes (p-value = 1.00 × 10−5) in infertile men compared to controls. Additionally, we detected a significant increase in predicted pathogenic de novo missense mutations affecting missense-intolerant genes (p-value = 5.01 × 10−4) in contrast to predicted benign de novo mutations. One gene we identify, RBM5, is an essential regulator of male germ cell pre-mRNA splicing and has been previously implicated in male infertility in mice. In a follow-up study, 6 rare pathogenic missense mutations affecting this gene are observed in a cohort of 2,506 infertile patients, whilst we find no such mutations in a cohort of 5,784 fertile men (p-value = 0.03). Our results provide evidence for the role of de novo mutations in severe male infertility and point to new candidate genes affecting fertility.
id RCAP_f130dcddb7e78b5767c9ee297dba540b
oai_identifier_str oai:repositorio.insa.pt:10400.18/8497
network_acronym_str RCAP
network_name_str Repositórios Científicos de Acesso Aberto de Portugal (RCAAP)
repository_id_str https://opendoar.ac.uk/repository/7160
spelling A de novo paradigm for male infertilityMale InfertilityInfertile ManSpermatogenesisGenética HumanaDoenças GenéticasDe novo mutations are known to play a prominent role in sporadic disorders with reduced fitness. We hypothesize that de novo mutations play an important role in severe male infertility and explain a portion of the genetic causes of this understudied disorder. To test this hypothesis, we utilize trio-based exome sequencing in a cohort of 185 infertile males and their unaffected parents. Following a systematic analysis, 29 of 145 rare (MAF < 0.1%) protein-altering de novo mutations are classified as possibly causative of the male infertility phenotype. We observed a significant enrichment of loss-of-function de novo mutations in loss-of-function-intolerant genes (p-value = 1.00 × 10−5) in infertile men compared to controls. Additionally, we detected a significant increase in predicted pathogenic de novo missense mutations affecting missense-intolerant genes (p-value = 5.01 × 10−4) in contrast to predicted benign de novo mutations. One gene we identify, RBM5, is an essential regulator of male germ cell pre-mRNA splicing and has been previously implicated in male infertility in mice. In a follow-up study, 6 rare pathogenic missense mutations affecting this gene are observed in a cohort of 2,506 infertile patients, whilst we find no such mutations in a cohort of 5,784 fertile men (p-value = 0.03). Our results provide evidence for the role of de novo mutations in severe male infertility and point to new candidate genes affecting fertility.Nature ResearchRepositório Científico do Instituto Nacional de SaúdeOud, M.S.Smits, R.M.Smith, H.E.Mastrorosa, F.K.Holt, G.S.Houston, B.J.de Vries, P.F.Alobaidi, B.K.S.Batty, L.E.Ismail, H.Greenwood, J.Sheth, H.Mikulasova, A.Astuti, G.D.N.Gilissen, C.McEleny, K.Turner, H.Coxhead, J.Cockell, S.Braat, D.D.M.Fleischer, K.D’Hauwers, K.W.M.Schaafsma, E.Conrad, Donald F.Nagirnaja, LiinaAston, Kenneth I.Carrell, Douglas T.Hotaling, James M.Jenkins, Timothy G.McLachlan, RobO’Bryan, Moira K.Schlegel, Peter N.Eisenberg, Michael L.Sandlow, Jay I.Jungheim, Emily S.Omurtag, Kenan R.Lopes, Alexandra M.Seixas, SusanaCarvalho, FilipaFernandes, SusanaBarros, AlbertoGonçalves, JoãoCaetano, IrisPinto, GraçaCorreia, SóniaLaan, MarisPunab, MargusMeyts, Ewa Rajpert-DeJørgensen, NielsAlmstrup, KristianKrausz, Csilla G.Jarvi, Keith A.Nagirnaja, L.Conrad, D.F.Friedrich, C.Kliesch, S.Aston, K.I.Riera-Escamilla, A.Krausz, C.Gonzaga-Jauregui, C.Santibanez-Koref, M.Elliott, D. J.Vissers, L.E.L.M.Tüttelmann, F.O’Bryan, M.K.Ramos, L.Xavier, M.J.van der Heijden, G.W.Veltman, J.A.2023-02-02T14:37:21Z2022-01-102022-01-10T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://hdl.handle.net/10400.18/8497eng2041-172310.1038/s41467-021-27132-8info:eu-repo/semantics/openAccessreponame:Repositórios Científicos de Acesso Aberto de Portugal (RCAAP)instname:FCCN, serviços digitais da FCT – Fundação para a Ciência e a Tecnologiainstacron:RCAAP2025-02-26T14:16:16Zoai:repositorio.insa.pt:10400.18/8497Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireinfo@rcaap.ptopendoar:https://opendoar.ac.uk/repository/71602025-05-28T21:30:24.427957Repositórios Científicos de Acesso Aberto de Portugal (RCAAP) - FCCN, serviços digitais da FCT – Fundação para a Ciência e a Tecnologiafalse
dc.title.none.fl_str_mv A de novo paradigm for male infertility
title A de novo paradigm for male infertility
spellingShingle A de novo paradigm for male infertility
Oud, M.S.
Male Infertility
Infertile Man
Spermatogenesis
Genética Humana
Doenças Genéticas
title_short A de novo paradigm for male infertility
title_full A de novo paradigm for male infertility
title_fullStr A de novo paradigm for male infertility
title_full_unstemmed A de novo paradigm for male infertility
title_sort A de novo paradigm for male infertility
author Oud, M.S.
author_facet Oud, M.S.
Smits, R.M.
Smith, H.E.
Mastrorosa, F.K.
Holt, G.S.
Houston, B.J.
de Vries, P.F.
Alobaidi, B.K.S.
Batty, L.E.
Ismail, H.
Greenwood, J.
Sheth, H.
Mikulasova, A.
Astuti, G.D.N.
Gilissen, C.
McEleny, K.
Turner, H.
Coxhead, J.
Cockell, S.
Braat, D.D.M.
Fleischer, K.
D’Hauwers, K.W.M.
Schaafsma, E.
Conrad, Donald F.
Nagirnaja, Liina
Aston, Kenneth I.
Carrell, Douglas T.
Hotaling, James M.
Jenkins, Timothy G.
McLachlan, Rob
O’Bryan, Moira K.
Schlegel, Peter N.
Eisenberg, Michael L.
Sandlow, Jay I.
Jungheim, Emily S.
Omurtag, Kenan R.
Lopes, Alexandra M.
Seixas, Susana
Carvalho, Filipa
Fernandes, Susana
Barros, Alberto
Gonçalves, João
Caetano, Iris
Pinto, Graça
Correia, Sónia
Laan, Maris
Punab, Margus
Meyts, Ewa Rajpert-De
Jørgensen, Niels
Almstrup, Kristian
Krausz, Csilla G.
Jarvi, Keith A.
Nagirnaja, L.
Conrad, D.F.
Friedrich, C.
Kliesch, S.
Aston, K.I.
Riera-Escamilla, A.
Krausz, C.
Gonzaga-Jauregui, C.
Santibanez-Koref, M.
Elliott, D. J.
Vissers, L.E.L.M.
Tüttelmann, F.
O’Bryan, M.K.
Ramos, L.
Xavier, M.J.
van der Heijden, G.W.
Veltman, J.A.
author_role author
author2 Smits, R.M.
Smith, H.E.
Mastrorosa, F.K.
Holt, G.S.
Houston, B.J.
de Vries, P.F.
Alobaidi, B.K.S.
Batty, L.E.
Ismail, H.
Greenwood, J.
Sheth, H.
Mikulasova, A.
Astuti, G.D.N.
Gilissen, C.
McEleny, K.
Turner, H.
Coxhead, J.
Cockell, S.
Braat, D.D.M.
Fleischer, K.
D’Hauwers, K.W.M.
Schaafsma, E.
Conrad, Donald F.
Nagirnaja, Liina
Aston, Kenneth I.
Carrell, Douglas T.
Hotaling, James M.
Jenkins, Timothy G.
McLachlan, Rob
O’Bryan, Moira K.
Schlegel, Peter N.
Eisenberg, Michael L.
Sandlow, Jay I.
Jungheim, Emily S.
Omurtag, Kenan R.
Lopes, Alexandra M.
Seixas, Susana
Carvalho, Filipa
Fernandes, Susana
Barros, Alberto
Gonçalves, João
Caetano, Iris
Pinto, Graça
Correia, Sónia
Laan, Maris
Punab, Margus
Meyts, Ewa Rajpert-De
Jørgensen, Niels
Almstrup, Kristian
Krausz, Csilla G.
Jarvi, Keith A.
Nagirnaja, L.
Conrad, D.F.
Friedrich, C.
Kliesch, S.
Aston, K.I.
Riera-Escamilla, A.
Krausz, C.
Gonzaga-Jauregui, C.
Santibanez-Koref, M.
Elliott, D. J.
Vissers, L.E.L.M.
Tüttelmann, F.
O’Bryan, M.K.
Ramos, L.
Xavier, M.J.
van der Heijden, G.W.
Veltman, J.A.
author2_role author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv Repositório Científico do Instituto Nacional de Saúde
dc.contributor.author.fl_str_mv Oud, M.S.
Smits, R.M.
Smith, H.E.
Mastrorosa, F.K.
Holt, G.S.
Houston, B.J.
de Vries, P.F.
Alobaidi, B.K.S.
Batty, L.E.
Ismail, H.
Greenwood, J.
Sheth, H.
Mikulasova, A.
Astuti, G.D.N.
Gilissen, C.
McEleny, K.
Turner, H.
Coxhead, J.
Cockell, S.
Braat, D.D.M.
Fleischer, K.
D’Hauwers, K.W.M.
Schaafsma, E.
Conrad, Donald F.
Nagirnaja, Liina
Aston, Kenneth I.
Carrell, Douglas T.
Hotaling, James M.
Jenkins, Timothy G.
McLachlan, Rob
O’Bryan, Moira K.
Schlegel, Peter N.
Eisenberg, Michael L.
Sandlow, Jay I.
Jungheim, Emily S.
Omurtag, Kenan R.
Lopes, Alexandra M.
Seixas, Susana
Carvalho, Filipa
Fernandes, Susana
Barros, Alberto
Gonçalves, João
Caetano, Iris
Pinto, Graça
Correia, Sónia
Laan, Maris
Punab, Margus
Meyts, Ewa Rajpert-De
Jørgensen, Niels
Almstrup, Kristian
Krausz, Csilla G.
Jarvi, Keith A.
Nagirnaja, L.
Conrad, D.F.
Friedrich, C.
Kliesch, S.
Aston, K.I.
Riera-Escamilla, A.
Krausz, C.
Gonzaga-Jauregui, C.
Santibanez-Koref, M.
Elliott, D. J.
Vissers, L.E.L.M.
Tüttelmann, F.
O’Bryan, M.K.
Ramos, L.
Xavier, M.J.
van der Heijden, G.W.
Veltman, J.A.
dc.subject.por.fl_str_mv Male Infertility
Infertile Man
Spermatogenesis
Genética Humana
Doenças Genéticas
topic Male Infertility
Infertile Man
Spermatogenesis
Genética Humana
Doenças Genéticas
description De novo mutations are known to play a prominent role in sporadic disorders with reduced fitness. We hypothesize that de novo mutations play an important role in severe male infertility and explain a portion of the genetic causes of this understudied disorder. To test this hypothesis, we utilize trio-based exome sequencing in a cohort of 185 infertile males and their unaffected parents. Following a systematic analysis, 29 of 145 rare (MAF < 0.1%) protein-altering de novo mutations are classified as possibly causative of the male infertility phenotype. We observed a significant enrichment of loss-of-function de novo mutations in loss-of-function-intolerant genes (p-value = 1.00 × 10−5) in infertile men compared to controls. Additionally, we detected a significant increase in predicted pathogenic de novo missense mutations affecting missense-intolerant genes (p-value = 5.01 × 10−4) in contrast to predicted benign de novo mutations. One gene we identify, RBM5, is an essential regulator of male germ cell pre-mRNA splicing and has been previously implicated in male infertility in mice. In a follow-up study, 6 rare pathogenic missense mutations affecting this gene are observed in a cohort of 2,506 infertile patients, whilst we find no such mutations in a cohort of 5,784 fertile men (p-value = 0.03). Our results provide evidence for the role of de novo mutations in severe male infertility and point to new candidate genes affecting fertility.
publishDate 2022
dc.date.none.fl_str_mv 2022-01-10
2022-01-10T00:00:00Z
2023-02-02T14:37:21Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://hdl.handle.net/10400.18/8497
url http://hdl.handle.net/10400.18/8497
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv 2041-1723
10.1038/s41467-021-27132-8
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Nature Research
publisher.none.fl_str_mv Nature Research
dc.source.none.fl_str_mv reponame:Repositórios Científicos de Acesso Aberto de Portugal (RCAAP)
instname:FCCN, serviços digitais da FCT – Fundação para a Ciência e a Tecnologia
instacron:RCAAP
instname_str FCCN, serviços digitais da FCT – Fundação para a Ciência e a Tecnologia
instacron_str RCAAP
institution RCAAP
reponame_str Repositórios Científicos de Acesso Aberto de Portugal (RCAAP)
collection Repositórios Científicos de Acesso Aberto de Portugal (RCAAP)
repository.name.fl_str_mv Repositórios Científicos de Acesso Aberto de Portugal (RCAAP) - FCCN, serviços digitais da FCT – Fundação para a Ciência e a Tecnologia
repository.mail.fl_str_mv info@rcaap.pt
_version_ 1833599305419587584