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Extracellular vesicles protein cargo as targets for Alzheimer’s disease

Bibliographic Details
Main Author: Pinho, Beatriz Almeida
Publication Date: 2024
Format: Master thesis
Language: eng
Source: Repositórios Científicos de Acesso Aberto de Portugal (RCAAP)
Download full: http://hdl.handle.net/10773/42480
Summary: Alzheimer’s Disease (AD) is a complex neurodegenerative disorder characterized by cognitive progressive decline, and the leading cause of dementia worldwide. The diagnosis of AD is challenging, and so far, there are no molecular tools based on peripheral biofluids available. Blood-derived extracellular vesicles (EVs) may constitute an accessible and non-invasive resource of biomarkers for AD. This project aimed to identify new biomarker candidates in EVs with diagnostic potential for AD from an antibody microarray analysis, which comprises pan- and phospho-specific antibodies. To identify EVs-enriched proteins which may constitute targets for AD 2 approaches were followed: i) an overlap with a list of genes related with AD from DisGeNET and ii) an overlap with a list of proteins also obtained by microarray analysis from AD cases. Further, protein-protein interaction networks were constructed, and the selected proteins/phosphoproteins, namely CTNNB1, RELA, PKM, GSK3α, MFN2, STAT1, and RAF1 tested in an AD-mimicking cell model. Alterations were observed in the levels of some targets tested, linked to AD pathological events, such as amyloid precursor protein (APP) processing, tau phosphorylation, neuroinflammation and synaptic dysfunction. Taken together, this thesis showed the potential of microarray analysis as an effective method for identifying AD-related targets. Further, the candidates identified are enriched in EVs and involved in several key pathogenic events, supporting their relevance as putative targets for AD diagnosis or therapeutics.
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spelling Extracellular vesicles protein cargo as targets for Alzheimer’s diseaseAlzheimer's diseaseExtracellular vesiclesBiomarkersAlzheimer’s Disease (AD) is a complex neurodegenerative disorder characterized by cognitive progressive decline, and the leading cause of dementia worldwide. The diagnosis of AD is challenging, and so far, there are no molecular tools based on peripheral biofluids available. Blood-derived extracellular vesicles (EVs) may constitute an accessible and non-invasive resource of biomarkers for AD. This project aimed to identify new biomarker candidates in EVs with diagnostic potential for AD from an antibody microarray analysis, which comprises pan- and phospho-specific antibodies. To identify EVs-enriched proteins which may constitute targets for AD 2 approaches were followed: i) an overlap with a list of genes related with AD from DisGeNET and ii) an overlap with a list of proteins also obtained by microarray analysis from AD cases. Further, protein-protein interaction networks were constructed, and the selected proteins/phosphoproteins, namely CTNNB1, RELA, PKM, GSK3α, MFN2, STAT1, and RAF1 tested in an AD-mimicking cell model. Alterations were observed in the levels of some targets tested, linked to AD pathological events, such as amyloid precursor protein (APP) processing, tau phosphorylation, neuroinflammation and synaptic dysfunction. Taken together, this thesis showed the potential of microarray analysis as an effective method for identifying AD-related targets. Further, the candidates identified are enriched in EVs and involved in several key pathogenic events, supporting their relevance as putative targets for AD diagnosis or therapeutics.A Doença de Alzheimer (DA) é um distúrbio neurodegenerativo complexo caracterizado por um declínio cognitivo progressivo, sendo a principal causa de demência em todo o mundo. O diagnóstico da DA é desafiante e, até ao momento, não existem ferramentas moleculares baseadas em biofluidos periféricos disponíveis. Vesículas extracelulares (VEs) derivadas do sangue podem constituir uma fonte acessível e não invasiva de biomarcadores para a DA. Esta tese teve como objetivo identificar novos candidatos a biomarcadores em VEs com potencial diagnóstico para a DA a partir de uma análise de microarray de anticorpos, que inclui anticorpos pan- e fosfo-específicos. Para identificar proteínas enriquecidas em VEs que possam constituir alvos para a DA, foram seguidas duas abordagens: i) uma sobreposição com uma lista de genes relacionados com a DA da DisGeNET e ii) uma sobreposição com uma lista de proteínas também obtidas por análise de microarray de casos de DA. Além disso, foram construídas redes de interação proteína-proteína e as proteínas/fosfoproteínas selecionadas, nomeadamente CTNNB1, RELA, PKM, GSK3α, MFN2, STAT1 e RAF1, foram testadas num modelo celular que mimetiza a DA. Foram observadas alterações nos níveis de alguns alvos testados, ligados a eventos patológicos da DA, como o processamento da proteína precursora de amiloide (PPA), fosforilação de tau, neuroinflamação e disfunção sináptica. Em conclusão, esta tese mostrou o potencial da análise de microarray como um método eficaz para identificar alvos relacionados com a DA. Além disso, os candidatos identificados são enriquecidos em VEs e estão envolvidos em vários eventos patogénicos, apoiando a sua relevância como possíveis alvos para diagnóstico ou terapêutica da DA.2026-07-19T00:00:00Z2024-07-11T00:00:00Z2024-07-11info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/masterThesisapplication/pdfhttp://hdl.handle.net/10773/42480engPinho, Beatriz Almeidainfo:eu-repo/semantics/embargoedAccessreponame:Repositórios Científicos de Acesso Aberto de Portugal (RCAAP)instname:FCCN, serviços digitais da FCT – Fundação para a Ciência e a Tecnologiainstacron:RCAAP2024-09-23T01:46:47Zoai:ria.ua.pt:10773/42480Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireinfo@rcaap.ptopendoar:https://opendoar.ac.uk/repository/71602025-05-28T18:53:58.291733Repositórios Científicos de Acesso Aberto de Portugal (RCAAP) - FCCN, serviços digitais da FCT – Fundação para a Ciência e a Tecnologiafalse
dc.title.none.fl_str_mv Extracellular vesicles protein cargo as targets for Alzheimer’s disease
title Extracellular vesicles protein cargo as targets for Alzheimer’s disease
spellingShingle Extracellular vesicles protein cargo as targets for Alzheimer’s disease
Pinho, Beatriz Almeida
Alzheimer's disease
Extracellular vesicles
Biomarkers
title_short Extracellular vesicles protein cargo as targets for Alzheimer’s disease
title_full Extracellular vesicles protein cargo as targets for Alzheimer’s disease
title_fullStr Extracellular vesicles protein cargo as targets for Alzheimer’s disease
title_full_unstemmed Extracellular vesicles protein cargo as targets for Alzheimer’s disease
title_sort Extracellular vesicles protein cargo as targets for Alzheimer’s disease
author Pinho, Beatriz Almeida
author_facet Pinho, Beatriz Almeida
author_role author
dc.contributor.author.fl_str_mv Pinho, Beatriz Almeida
dc.subject.por.fl_str_mv Alzheimer's disease
Extracellular vesicles
Biomarkers
topic Alzheimer's disease
Extracellular vesicles
Biomarkers
description Alzheimer’s Disease (AD) is a complex neurodegenerative disorder characterized by cognitive progressive decline, and the leading cause of dementia worldwide. The diagnosis of AD is challenging, and so far, there are no molecular tools based on peripheral biofluids available. Blood-derived extracellular vesicles (EVs) may constitute an accessible and non-invasive resource of biomarkers for AD. This project aimed to identify new biomarker candidates in EVs with diagnostic potential for AD from an antibody microarray analysis, which comprises pan- and phospho-specific antibodies. To identify EVs-enriched proteins which may constitute targets for AD 2 approaches were followed: i) an overlap with a list of genes related with AD from DisGeNET and ii) an overlap with a list of proteins also obtained by microarray analysis from AD cases. Further, protein-protein interaction networks were constructed, and the selected proteins/phosphoproteins, namely CTNNB1, RELA, PKM, GSK3α, MFN2, STAT1, and RAF1 tested in an AD-mimicking cell model. Alterations were observed in the levels of some targets tested, linked to AD pathological events, such as amyloid precursor protein (APP) processing, tau phosphorylation, neuroinflammation and synaptic dysfunction. Taken together, this thesis showed the potential of microarray analysis as an effective method for identifying AD-related targets. Further, the candidates identified are enriched in EVs and involved in several key pathogenic events, supporting their relevance as putative targets for AD diagnosis or therapeutics.
publishDate 2024
dc.date.none.fl_str_mv 2024-07-11T00:00:00Z
2024-07-11
2026-07-19T00:00:00Z
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