Genomic predictive model for recurrence and metastasis development in head and neck squamous cell carcinoma patients

Detalhes bibliográficos
Autor(a) principal: Ribeiro, Ilda Patrícia
Data de Publicação: 2017
Outros Autores: Caramelo, Francisco, Esteves, Luísa, Menoita, Joana, Marques, Francisco, Barroso, Leonor, Miguéis, Jorge, Melo, Joana Barbosa, Carreira, Isabel Marques
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositórios Científicos de Acesso Aberto de Portugal (RCAAP)
Texto Completo: https://hdl.handle.net/10316/108378
https://doi.org/10.1038/s41598-017-14377-x
Resumo: The head and neck squamous cell carcinoma (HNSCC) population consists mainly of high-risk for recurrence and locally advanced stage patients. Increased knowledge of the HNSCC genomic profile can improve early diagnosis and treatment outcomes. The development of models to identify consistent genomic patterns that distinguish HNSCC patients that will recur and/or develop metastasis after treatment is of utmost importance to decrease mortality and improve survival rates. In this study, we used array comparative genomic hybridization data from HNSCC patients to implement a robust model to predict HNSCC recurrence/metastasis. This predictive model showed a good accuracy (>80%) and was validated in an independent population from TCGA data portal. This predictive genomic model comprises chromosomal regions from 5p, 6p, 8p, 9p, 11q, 12q, 15q and 17p, where several upstream and downstream members of signaling pathways that lead to an increase in cell proliferation and invasion are mapped. The introduction of genomic predictive models in clinical practice might contribute to a more individualized clinical management of the HNSCC patients, reducing recurrences and improving patients' quality of life. The power of this genomic model to predict the recurrence and metastases development should be evaluated in other HNSCC populations.
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spelling Genomic predictive model for recurrence and metastasis development in head and neck squamous cell carcinoma patientsAdultChromosomes, HumanCohort StudiesComparative Genomic HybridizationFemaleHumansMaleMiddle AgedNeoplasm MetastasisPrognosisRecurrenceSquamous Cell Carcinoma of Head and NeckGenomicsModels, StatisticalThe head and neck squamous cell carcinoma (HNSCC) population consists mainly of high-risk for recurrence and locally advanced stage patients. Increased knowledge of the HNSCC genomic profile can improve early diagnosis and treatment outcomes. The development of models to identify consistent genomic patterns that distinguish HNSCC patients that will recur and/or develop metastasis after treatment is of utmost importance to decrease mortality and improve survival rates. In this study, we used array comparative genomic hybridization data from HNSCC patients to implement a robust model to predict HNSCC recurrence/metastasis. This predictive model showed a good accuracy (>80%) and was validated in an independent population from TCGA data portal. This predictive genomic model comprises chromosomal regions from 5p, 6p, 8p, 9p, 11q, 12q, 15q and 17p, where several upstream and downstream members of signaling pathways that lead to an increase in cell proliferation and invasion are mapped. The introduction of genomic predictive models in clinical practice might contribute to a more individualized clinical management of the HNSCC patients, reducing recurrences and improving patients' quality of life. The power of this genomic model to predict the recurrence and metastases development should be evaluated in other HNSCC populations.Ribeiro I.P. is a recipient of a PhD fellowship (SFRH/BD/52290/2013) from the Portuguese Foundation for Science and Technology. Tis work was in part supported by CIMAGO (Center of Investigation on Environment Genetics and Oncobiology - Faculty of Medicine, University of Coimbra).Springer Nature2017-10-24info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlehttps://hdl.handle.net/10316/108378https://hdl.handle.net/10316/108378https://doi.org/10.1038/s41598-017-14377-xeng2045-2322Ribeiro, Ilda PatríciaCaramelo, FranciscoEsteves, LuísaMenoita, JoanaMarques, FranciscoBarroso, LeonorMiguéis, JorgeMelo, Joana BarbosaCarreira, Isabel Marquesinfo:eu-repo/semantics/openAccessreponame:Repositórios Científicos de Acesso Aberto de Portugal (RCAAP)instname:FCCN, serviços digitais da FCT – Fundação para a Ciência e a Tecnologiainstacron:RCAAP2025-02-25T16:21:15Zoai:estudogeral.uc.pt:10316/108378Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireinfo@rcaap.ptopendoar:https://opendoar.ac.uk/repository/71602025-05-29T05:59:45.461642Repositórios Científicos de Acesso Aberto de Portugal (RCAAP) - FCCN, serviços digitais da FCT – Fundação para a Ciência e a Tecnologiafalse
dc.title.none.fl_str_mv Genomic predictive model for recurrence and metastasis development in head and neck squamous cell carcinoma patients
title Genomic predictive model for recurrence and metastasis development in head and neck squamous cell carcinoma patients
spellingShingle Genomic predictive model for recurrence and metastasis development in head and neck squamous cell carcinoma patients
Ribeiro, Ilda Patrícia
Adult
Chromosomes, Human
Cohort Studies
Comparative Genomic Hybridization
Female
Humans
Male
Middle Aged
Neoplasm Metastasis
Prognosis
Recurrence
Squamous Cell Carcinoma of Head and Neck
Genomics
Models, Statistical
title_short Genomic predictive model for recurrence and metastasis development in head and neck squamous cell carcinoma patients
title_full Genomic predictive model for recurrence and metastasis development in head and neck squamous cell carcinoma patients
title_fullStr Genomic predictive model for recurrence and metastasis development in head and neck squamous cell carcinoma patients
title_full_unstemmed Genomic predictive model for recurrence and metastasis development in head and neck squamous cell carcinoma patients
title_sort Genomic predictive model for recurrence and metastasis development in head and neck squamous cell carcinoma patients
author Ribeiro, Ilda Patrícia
author_facet Ribeiro, Ilda Patrícia
Caramelo, Francisco
Esteves, Luísa
Menoita, Joana
Marques, Francisco
Barroso, Leonor
Miguéis, Jorge
Melo, Joana Barbosa
Carreira, Isabel Marques
author_role author
author2 Caramelo, Francisco
Esteves, Luísa
Menoita, Joana
Marques, Francisco
Barroso, Leonor
Miguéis, Jorge
Melo, Joana Barbosa
Carreira, Isabel Marques
author2_role author
author
author
author
author
author
author
author
dc.contributor.author.fl_str_mv Ribeiro, Ilda Patrícia
Caramelo, Francisco
Esteves, Luísa
Menoita, Joana
Marques, Francisco
Barroso, Leonor
Miguéis, Jorge
Melo, Joana Barbosa
Carreira, Isabel Marques
dc.subject.por.fl_str_mv Adult
Chromosomes, Human
Cohort Studies
Comparative Genomic Hybridization
Female
Humans
Male
Middle Aged
Neoplasm Metastasis
Prognosis
Recurrence
Squamous Cell Carcinoma of Head and Neck
Genomics
Models, Statistical
topic Adult
Chromosomes, Human
Cohort Studies
Comparative Genomic Hybridization
Female
Humans
Male
Middle Aged
Neoplasm Metastasis
Prognosis
Recurrence
Squamous Cell Carcinoma of Head and Neck
Genomics
Models, Statistical
description The head and neck squamous cell carcinoma (HNSCC) population consists mainly of high-risk for recurrence and locally advanced stage patients. Increased knowledge of the HNSCC genomic profile can improve early diagnosis and treatment outcomes. The development of models to identify consistent genomic patterns that distinguish HNSCC patients that will recur and/or develop metastasis after treatment is of utmost importance to decrease mortality and improve survival rates. In this study, we used array comparative genomic hybridization data from HNSCC patients to implement a robust model to predict HNSCC recurrence/metastasis. This predictive model showed a good accuracy (>80%) and was validated in an independent population from TCGA data portal. This predictive genomic model comprises chromosomal regions from 5p, 6p, 8p, 9p, 11q, 12q, 15q and 17p, where several upstream and downstream members of signaling pathways that lead to an increase in cell proliferation and invasion are mapped. The introduction of genomic predictive models in clinical practice might contribute to a more individualized clinical management of the HNSCC patients, reducing recurrences and improving patients' quality of life. The power of this genomic model to predict the recurrence and metastases development should be evaluated in other HNSCC populations.
publishDate 2017
dc.date.none.fl_str_mv 2017-10-24
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv https://hdl.handle.net/10316/108378
https://hdl.handle.net/10316/108378
https://doi.org/10.1038/s41598-017-14377-x
url https://hdl.handle.net/10316/108378
https://doi.org/10.1038/s41598-017-14377-x
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv 2045-2322
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.publisher.none.fl_str_mv Springer Nature
publisher.none.fl_str_mv Springer Nature
dc.source.none.fl_str_mv reponame:Repositórios Científicos de Acesso Aberto de Portugal (RCAAP)
instname:FCCN, serviços digitais da FCT – Fundação para a Ciência e a Tecnologia
instacron:RCAAP
instname_str FCCN, serviços digitais da FCT – Fundação para a Ciência e a Tecnologia
instacron_str RCAAP
institution RCAAP
reponame_str Repositórios Científicos de Acesso Aberto de Portugal (RCAAP)
collection Repositórios Científicos de Acesso Aberto de Portugal (RCAAP)
repository.name.fl_str_mv Repositórios Científicos de Acesso Aberto de Portugal (RCAAP) - FCCN, serviços digitais da FCT – Fundação para a Ciência e a Tecnologia
repository.mail.fl_str_mv info@rcaap.pt
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