Genotypic and pheno-metabolomic characterization of a Saccharomyces cerevisiae strain collection

Bibliographic Details
Main Author: Duarte, Ricardo Franco
Publication Date: 2011
Other Authors: Mendes, Inês, Castro, C. C., Silva, J. S., Xavier, A. L., Neves, J. Drumonde, Oliveira, C., Martins, Rui C., Oliveira, J. M., Ferreira, António C., Schuller, Dorit Elisabeth
Language: eng
Source: Repositórios Científicos de Acesso Aberto de Portugal (RCAAP)
Download full: http://hdl.handle.net/1822/13468
Summary: The objective of the present work was to gain a deeper understanding of the phenotypic diversity of natural isolates of Saccharomyces cerevisiae, using high-throughput methods in combination with bioanalytical data. A S. cerevisiae strain collection was constituted comprising 187 strains from different geographical origins and technological uses. Some microsatellite alleles and phenotypes were identified as responsible for the highest strain variability. All strains were used for fermentation with white grapes must, and final fermentation products were analysed using fiber optics spectroscopy and bioanalytical quantification. Inter-strain aromatic profiles (primary fermentation products, higher alcohols, esters, fatty acids) were discriminated by HPLC and GC-MS. Relating the metabolic signature of the strains with phenotypic and genetic data by computational analysis is a pre-requisite to obtain a holistic overview of yeast pheno-metabolomics.
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spelling Genotypic and pheno-metabolomic characterization of a Saccharomyces cerevisiae strain collectionSaccharomyces cerevisiae;PhenotypingGenotypingGC-MSHPLCWine strainYeast collectionSpectroscopyThe objective of the present work was to gain a deeper understanding of the phenotypic diversity of natural isolates of Saccharomyces cerevisiae, using high-throughput methods in combination with bioanalytical data. A S. cerevisiae strain collection was constituted comprising 187 strains from different geographical origins and technological uses. Some microsatellite alleles and phenotypes were identified as responsible for the highest strain variability. All strains were used for fermentation with white grapes must, and final fermentation products were analysed using fiber optics spectroscopy and bioanalytical quantification. Inter-strain aromatic profiles (primary fermentation products, higher alcohols, esters, fatty acids) were discriminated by HPLC and GC-MS. Relating the metabolic signature of the strains with phenotypic and genetic data by computational analysis is a pre-requisite to obtain a holistic overview of yeast pheno-metabolomics.O objectivo do presente trabalho consistiu em explorar a diversidade fenotípica de isolados naturais de Saccharomyces cerevisiae, através de métodos de alto débito combinados com dados bioanalíticos. Uma colecção de 187 estirpes de S. cerevisiae foi constituída com isolados de origens geográficas e aplicações tecnológicas diferentes. Alguns alelos de microssatélites e alguns fenótipos foram identificados como responsáveis pela grande variabilidade entre estirpes. Todas as estirpes foram usadas para fermentações em mosto de uvas brancas, e os produtos finais de fermentação foram analisados usando espectroscopia de fibra óptica e quantificação bioanalítica. Os perfis aromáticos entre estirpes (produtos de fermentação primários, álcoois superiores, esteres, ácidos gordos) foram descriminados por HPLC e GC-MS. A relação, através de abordagens computacionais, entre a assinatura metabólica das estirpes e os dados fenotípicos e genotípicos, é um pré-requisito para obter uma visão holística do feno-metaboloma da levedura.Fundação para a Ciência e a Tecnologia (FCT) - SFRH/BD/48591/2008, SFRH/BD/46737/2008, SFRH/BD/48616/2008, SFRH/BD/74798/2010,Universidade do MinhoDuarte, Ricardo FrancoMendes, InêsCastro, C. C.Silva, J. S.Xavier, A. L.Neves, J. DrumondeOliveira, C.Martins, Rui C.Oliveira, J. M.Ferreira, António C.Schuller, Dorit Elisabeth20112011-01-01T00:00:00Zconference paperinfo:eu-repo/semantics/publishedVersionapplication/pdfapplication/pdfhttp://hdl.handle.net/1822/13468enginfo:eu-repo/semantics/openAccessreponame:Repositórios Científicos de Acesso Aberto de Portugal (RCAAP)instname:FCCN, serviços digitais da FCT – Fundação para a Ciência e a Tecnologiainstacron:RCAAP2024-05-11T04:52:55Zoai:repositorium.sdum.uminho.pt:1822/13468Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireinfo@rcaap.ptopendoar:https://opendoar.ac.uk/repository/71602025-05-28T15:01:19.920873Repositórios Científicos de Acesso Aberto de Portugal (RCAAP) - FCCN, serviços digitais da FCT – Fundação para a Ciência e a Tecnologiafalse
dc.title.none.fl_str_mv Genotypic and pheno-metabolomic characterization of a Saccharomyces cerevisiae strain collection
title Genotypic and pheno-metabolomic characterization of a Saccharomyces cerevisiae strain collection
spellingShingle Genotypic and pheno-metabolomic characterization of a Saccharomyces cerevisiae strain collection
Duarte, Ricardo Franco
Saccharomyces cerevisiae;
Phenotyping
Genotyping
GC-MS
HPLC
Wine strain
Yeast collection
Spectroscopy
title_short Genotypic and pheno-metabolomic characterization of a Saccharomyces cerevisiae strain collection
title_full Genotypic and pheno-metabolomic characterization of a Saccharomyces cerevisiae strain collection
title_fullStr Genotypic and pheno-metabolomic characterization of a Saccharomyces cerevisiae strain collection
title_full_unstemmed Genotypic and pheno-metabolomic characterization of a Saccharomyces cerevisiae strain collection
title_sort Genotypic and pheno-metabolomic characterization of a Saccharomyces cerevisiae strain collection
author Duarte, Ricardo Franco
author_facet Duarte, Ricardo Franco
Mendes, Inês
Castro, C. C.
Silva, J. S.
Xavier, A. L.
Neves, J. Drumonde
Oliveira, C.
Martins, Rui C.
Oliveira, J. M.
Ferreira, António C.
Schuller, Dorit Elisabeth
author_role author
author2 Mendes, Inês
Castro, C. C.
Silva, J. S.
Xavier, A. L.
Neves, J. Drumonde
Oliveira, C.
Martins, Rui C.
Oliveira, J. M.
Ferreira, António C.
Schuller, Dorit Elisabeth
author2_role author
author
author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv Universidade do Minho
dc.contributor.author.fl_str_mv Duarte, Ricardo Franco
Mendes, Inês
Castro, C. C.
Silva, J. S.
Xavier, A. L.
Neves, J. Drumonde
Oliveira, C.
Martins, Rui C.
Oliveira, J. M.
Ferreira, António C.
Schuller, Dorit Elisabeth
dc.subject.por.fl_str_mv Saccharomyces cerevisiae;
Phenotyping
Genotyping
GC-MS
HPLC
Wine strain
Yeast collection
Spectroscopy
topic Saccharomyces cerevisiae;
Phenotyping
Genotyping
GC-MS
HPLC
Wine strain
Yeast collection
Spectroscopy
description The objective of the present work was to gain a deeper understanding of the phenotypic diversity of natural isolates of Saccharomyces cerevisiae, using high-throughput methods in combination with bioanalytical data. A S. cerevisiae strain collection was constituted comprising 187 strains from different geographical origins and technological uses. Some microsatellite alleles and phenotypes were identified as responsible for the highest strain variability. All strains were used for fermentation with white grapes must, and final fermentation products were analysed using fiber optics spectroscopy and bioanalytical quantification. Inter-strain aromatic profiles (primary fermentation products, higher alcohols, esters, fatty acids) were discriminated by HPLC and GC-MS. Relating the metabolic signature of the strains with phenotypic and genetic data by computational analysis is a pre-requisite to obtain a holistic overview of yeast pheno-metabolomics.
publishDate 2011
dc.date.none.fl_str_mv 2011
2011-01-01T00:00:00Z
dc.type.driver.fl_str_mv conference paper
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://hdl.handle.net/1822/13468
url http://hdl.handle.net/1822/13468
dc.language.iso.fl_str_mv eng
language eng
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
application/pdf
dc.source.none.fl_str_mv reponame:Repositórios Científicos de Acesso Aberto de Portugal (RCAAP)
instname:FCCN, serviços digitais da FCT – Fundação para a Ciência e a Tecnologia
instacron:RCAAP
instname_str FCCN, serviços digitais da FCT – Fundação para a Ciência e a Tecnologia
instacron_str RCAAP
institution RCAAP
reponame_str Repositórios Científicos de Acesso Aberto de Portugal (RCAAP)
collection Repositórios Científicos de Acesso Aberto de Portugal (RCAAP)
repository.name.fl_str_mv Repositórios Científicos de Acesso Aberto de Portugal (RCAAP) - FCCN, serviços digitais da FCT – Fundação para a Ciência e a Tecnologia
repository.mail.fl_str_mv info@rcaap.pt
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