Genotypic and pheno-metabolomic characterization of a Saccharomyces cerevisiae strain collection
Main Author: | |
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Publication Date: | 2011 |
Other Authors: | , , , , , , , , , |
Language: | eng |
Source: | Repositórios Científicos de Acesso Aberto de Portugal (RCAAP) |
Download full: | http://hdl.handle.net/1822/13468 |
Summary: | The objective of the present work was to gain a deeper understanding of the phenotypic diversity of natural isolates of Saccharomyces cerevisiae, using high-throughput methods in combination with bioanalytical data. A S. cerevisiae strain collection was constituted comprising 187 strains from different geographical origins and technological uses. Some microsatellite alleles and phenotypes were identified as responsible for the highest strain variability. All strains were used for fermentation with white grapes must, and final fermentation products were analysed using fiber optics spectroscopy and bioanalytical quantification. Inter-strain aromatic profiles (primary fermentation products, higher alcohols, esters, fatty acids) were discriminated by HPLC and GC-MS. Relating the metabolic signature of the strains with phenotypic and genetic data by computational analysis is a pre-requisite to obtain a holistic overview of yeast pheno-metabolomics. |
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Genotypic and pheno-metabolomic characterization of a Saccharomyces cerevisiae strain collectionSaccharomyces cerevisiae;PhenotypingGenotypingGC-MSHPLCWine strainYeast collectionSpectroscopyThe objective of the present work was to gain a deeper understanding of the phenotypic diversity of natural isolates of Saccharomyces cerevisiae, using high-throughput methods in combination with bioanalytical data. A S. cerevisiae strain collection was constituted comprising 187 strains from different geographical origins and technological uses. Some microsatellite alleles and phenotypes were identified as responsible for the highest strain variability. All strains were used for fermentation with white grapes must, and final fermentation products were analysed using fiber optics spectroscopy and bioanalytical quantification. Inter-strain aromatic profiles (primary fermentation products, higher alcohols, esters, fatty acids) were discriminated by HPLC and GC-MS. Relating the metabolic signature of the strains with phenotypic and genetic data by computational analysis is a pre-requisite to obtain a holistic overview of yeast pheno-metabolomics.O objectivo do presente trabalho consistiu em explorar a diversidade fenotípica de isolados naturais de Saccharomyces cerevisiae, através de métodos de alto débito combinados com dados bioanalíticos. Uma colecção de 187 estirpes de S. cerevisiae foi constituída com isolados de origens geográficas e aplicações tecnológicas diferentes. Alguns alelos de microssatélites e alguns fenótipos foram identificados como responsáveis pela grande variabilidade entre estirpes. Todas as estirpes foram usadas para fermentações em mosto de uvas brancas, e os produtos finais de fermentação foram analisados usando espectroscopia de fibra óptica e quantificação bioanalítica. Os perfis aromáticos entre estirpes (produtos de fermentação primários, álcoois superiores, esteres, ácidos gordos) foram descriminados por HPLC e GC-MS. A relação, através de abordagens computacionais, entre a assinatura metabólica das estirpes e os dados fenotípicos e genotípicos, é um pré-requisito para obter uma visão holística do feno-metaboloma da levedura.Fundação para a Ciência e a Tecnologia (FCT) - SFRH/BD/48591/2008, SFRH/BD/46737/2008, SFRH/BD/48616/2008, SFRH/BD/74798/2010,Universidade do MinhoDuarte, Ricardo FrancoMendes, InêsCastro, C. C.Silva, J. S.Xavier, A. L.Neves, J. DrumondeOliveira, C.Martins, Rui C.Oliveira, J. M.Ferreira, António C.Schuller, Dorit Elisabeth20112011-01-01T00:00:00Zconference paperinfo:eu-repo/semantics/publishedVersionapplication/pdfapplication/pdfhttp://hdl.handle.net/1822/13468enginfo:eu-repo/semantics/openAccessreponame:Repositórios Científicos de Acesso Aberto de Portugal (RCAAP)instname:FCCN, serviços digitais da FCT – Fundação para a Ciência e a Tecnologiainstacron:RCAAP2024-05-11T04:52:55Zoai:repositorium.sdum.uminho.pt:1822/13468Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireinfo@rcaap.ptopendoar:https://opendoar.ac.uk/repository/71602025-05-28T15:01:19.920873Repositórios Científicos de Acesso Aberto de Portugal (RCAAP) - FCCN, serviços digitais da FCT – Fundação para a Ciência e a Tecnologiafalse |
dc.title.none.fl_str_mv |
Genotypic and pheno-metabolomic characterization of a Saccharomyces cerevisiae strain collection |
title |
Genotypic and pheno-metabolomic characterization of a Saccharomyces cerevisiae strain collection |
spellingShingle |
Genotypic and pheno-metabolomic characterization of a Saccharomyces cerevisiae strain collection Duarte, Ricardo Franco Saccharomyces cerevisiae; Phenotyping Genotyping GC-MS HPLC Wine strain Yeast collection Spectroscopy |
title_short |
Genotypic and pheno-metabolomic characterization of a Saccharomyces cerevisiae strain collection |
title_full |
Genotypic and pheno-metabolomic characterization of a Saccharomyces cerevisiae strain collection |
title_fullStr |
Genotypic and pheno-metabolomic characterization of a Saccharomyces cerevisiae strain collection |
title_full_unstemmed |
Genotypic and pheno-metabolomic characterization of a Saccharomyces cerevisiae strain collection |
title_sort |
Genotypic and pheno-metabolomic characterization of a Saccharomyces cerevisiae strain collection |
author |
Duarte, Ricardo Franco |
author_facet |
Duarte, Ricardo Franco Mendes, Inês Castro, C. C. Silva, J. S. Xavier, A. L. Neves, J. Drumonde Oliveira, C. Martins, Rui C. Oliveira, J. M. Ferreira, António C. Schuller, Dorit Elisabeth |
author_role |
author |
author2 |
Mendes, Inês Castro, C. C. Silva, J. S. Xavier, A. L. Neves, J. Drumonde Oliveira, C. Martins, Rui C. Oliveira, J. M. Ferreira, António C. Schuller, Dorit Elisabeth |
author2_role |
author author author author author author author author author author |
dc.contributor.none.fl_str_mv |
Universidade do Minho |
dc.contributor.author.fl_str_mv |
Duarte, Ricardo Franco Mendes, Inês Castro, C. C. Silva, J. S. Xavier, A. L. Neves, J. Drumonde Oliveira, C. Martins, Rui C. Oliveira, J. M. Ferreira, António C. Schuller, Dorit Elisabeth |
dc.subject.por.fl_str_mv |
Saccharomyces cerevisiae; Phenotyping Genotyping GC-MS HPLC Wine strain Yeast collection Spectroscopy |
topic |
Saccharomyces cerevisiae; Phenotyping Genotyping GC-MS HPLC Wine strain Yeast collection Spectroscopy |
description |
The objective of the present work was to gain a deeper understanding of the phenotypic diversity of natural isolates of Saccharomyces cerevisiae, using high-throughput methods in combination with bioanalytical data. A S. cerevisiae strain collection was constituted comprising 187 strains from different geographical origins and technological uses. Some microsatellite alleles and phenotypes were identified as responsible for the highest strain variability. All strains were used for fermentation with white grapes must, and final fermentation products were analysed using fiber optics spectroscopy and bioanalytical quantification. Inter-strain aromatic profiles (primary fermentation products, higher alcohols, esters, fatty acids) were discriminated by HPLC and GC-MS. Relating the metabolic signature of the strains with phenotypic and genetic data by computational analysis is a pre-requisite to obtain a holistic overview of yeast pheno-metabolomics. |
publishDate |
2011 |
dc.date.none.fl_str_mv |
2011 2011-01-01T00:00:00Z |
dc.type.driver.fl_str_mv |
conference paper |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://hdl.handle.net/1822/13468 |
url |
http://hdl.handle.net/1822/13468 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
application/pdf application/pdf |
dc.source.none.fl_str_mv |
reponame:Repositórios Científicos de Acesso Aberto de Portugal (RCAAP) instname:FCCN, serviços digitais da FCT – Fundação para a Ciência e a Tecnologia instacron:RCAAP |
instname_str |
FCCN, serviços digitais da FCT – Fundação para a Ciência e a Tecnologia |
instacron_str |
RCAAP |
institution |
RCAAP |
reponame_str |
Repositórios Científicos de Acesso Aberto de Portugal (RCAAP) |
collection |
Repositórios Científicos de Acesso Aberto de Portugal (RCAAP) |
repository.name.fl_str_mv |
Repositórios Científicos de Acesso Aberto de Portugal (RCAAP) - FCCN, serviços digitais da FCT – Fundação para a Ciência e a Tecnologia |
repository.mail.fl_str_mv |
info@rcaap.pt |
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1833595047416692736 |