A minimally-invasive method for sampling human petrous bones from the cranial base for ancient DNA analysis

Detalhes bibliográficos
Autor(a) principal: Sirak, Kendra A
Data de Publicação: 2017
Outros Autores: Fernandes, Daniel M., Cheronet, Olivia, Novak, Mario, Gamarra, Beatriz, Balassa, Tímea, Bernert, Zsolt, Cséki, Andrea, Dani, János, Gallina, József Zsolt, Kocsis-Buruzs, Gábor, Kővári, Ivett, László, Orsolya, Pap, Ildikó, Patay, Róbert, Petkes, Zsolt, Szenthe, Gergely, Szeniczey, Tamás, Hajdu, Tamás, Pinhasi, Ron
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositórios Científicos de Acesso Aberto de Portugal (RCAAP)
Texto Completo: https://hdl.handle.net/10316/108101
https://doi.org/10.2144/000114558
Resumo: Ancient DNA (aDNA) research involves invasive and destructive sampling procedures that are often incompatible with anthropological, anatomical, and bioarcheological analyses requiring intact skeletal remains. The osseous labyrinth inside the petrous bone has been shown to yield higher amounts of endogenous DNA than any other skeletal element; however, accessing this labyrinth in cases of a complete or reconstructed skull involves causing major structural damage to the cranial vault or base. Here, we describe a novel cranial base drilling method (CBDM) for accessing the osseous labyrinth from the cranial base that prevents damaging the surrounding cranial features, making it highly complementary to morphological analyses. We assessed this method by comparing the aDNA results from one petrous bone processed using our novel method to its pair, which was processed using established protocols for sampling disarticulated petrous bones. We show a decrease in endogenous DNA and molecular copy numbers when the drilling method is used; however, we also show that this method produces more endogenous DNA and higher copy numbers than any postcranial bone. Our results demonstrate that this minimally-invasive method reduces the loss of genetic data associated with the use of other skeletal elements and enables the combined craniometric and genetic study of individuals with archeological, cultural, and evolutionary value.
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spelling A minimally-invasive method for sampling human petrous bones from the cranial base for ancient DNA analysiscranial base drilling methodpetrous boneancient DNApreservation of skeletal remainsAnthropologyDNA, AncientGene LibraryHumansMinimally Invasive Surgical ProceduresOrthopedic ProceduresPetrous BoneSequence Analysis, DNASkullSpecimen HandlingAncient DNA (aDNA) research involves invasive and destructive sampling procedures that are often incompatible with anthropological, anatomical, and bioarcheological analyses requiring intact skeletal remains. The osseous labyrinth inside the petrous bone has been shown to yield higher amounts of endogenous DNA than any other skeletal element; however, accessing this labyrinth in cases of a complete or reconstructed skull involves causing major structural damage to the cranial vault or base. Here, we describe a novel cranial base drilling method (CBDM) for accessing the osseous labyrinth from the cranial base that prevents damaging the surrounding cranial features, making it highly complementary to morphological analyses. We assessed this method by comparing the aDNA results from one petrous bone processed using our novel method to its pair, which was processed using established protocols for sampling disarticulated petrous bones. We show a decrease in endogenous DNA and molecular copy numbers when the drilling method is used; however, we also show that this method produces more endogenous DNA and higher copy numbers than any postcranial bone. Our results demonstrate that this minimally-invasive method reduces the loss of genetic data associated with the use of other skeletal elements and enables the combined craniometric and genetic study of individuals with archeological, cultural, and evolutionary value.Eaton Publishing Co.2017-06-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlehttps://hdl.handle.net/10316/108101https://hdl.handle.net/10316/108101https://doi.org/10.2144/000114558eng0736-62051940-9818Sirak, Kendra AFernandes, Daniel M.Cheronet, OliviaNovak, MarioGamarra, BeatrizBalassa, TímeaBernert, ZsoltCséki, AndreaDani, JánosGallina, József ZsoltKocsis-Buruzs, GáborKővári, IvettLászló, OrsolyaPap, IldikóPatay, RóbertPetkes, ZsoltSzenthe, GergelySzeniczey, TamásHajdu, TamásPinhasi, Roninfo:eu-repo/semantics/openAccessreponame:Repositórios Científicos de Acesso Aberto de Portugal (RCAAP)instname:FCCN, serviços digitais da FCT – Fundação para a Ciência e a Tecnologiainstacron:RCAAP2023-08-11T09:43:40Zoai:estudogeral.uc.pt:10316/108101Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireinfo@rcaap.ptopendoar:https://opendoar.ac.uk/repository/71602025-05-29T05:59:06.798548Repositórios Científicos de Acesso Aberto de Portugal (RCAAP) - FCCN, serviços digitais da FCT – Fundação para a Ciência e a Tecnologiafalse
dc.title.none.fl_str_mv A minimally-invasive method for sampling human petrous bones from the cranial base for ancient DNA analysis
title A minimally-invasive method for sampling human petrous bones from the cranial base for ancient DNA analysis
spellingShingle A minimally-invasive method for sampling human petrous bones from the cranial base for ancient DNA analysis
Sirak, Kendra A
cranial base drilling method
petrous bone
ancient DNA
preservation of skeletal remains
Anthropology
DNA, Ancient
Gene Library
Humans
Minimally Invasive Surgical Procedures
Orthopedic Procedures
Petrous Bone
Sequence Analysis, DNA
Skull
Specimen Handling
title_short A minimally-invasive method for sampling human petrous bones from the cranial base for ancient DNA analysis
title_full A minimally-invasive method for sampling human petrous bones from the cranial base for ancient DNA analysis
title_fullStr A minimally-invasive method for sampling human petrous bones from the cranial base for ancient DNA analysis
title_full_unstemmed A minimally-invasive method for sampling human petrous bones from the cranial base for ancient DNA analysis
title_sort A minimally-invasive method for sampling human petrous bones from the cranial base for ancient DNA analysis
author Sirak, Kendra A
author_facet Sirak, Kendra A
Fernandes, Daniel M.
Cheronet, Olivia
Novak, Mario
Gamarra, Beatriz
Balassa, Tímea
Bernert, Zsolt
Cséki, Andrea
Dani, János
Gallina, József Zsolt
Kocsis-Buruzs, Gábor
Kővári, Ivett
László, Orsolya
Pap, Ildikó
Patay, Róbert
Petkes, Zsolt
Szenthe, Gergely
Szeniczey, Tamás
Hajdu, Tamás
Pinhasi, Ron
author_role author
author2 Fernandes, Daniel M.
Cheronet, Olivia
Novak, Mario
Gamarra, Beatriz
Balassa, Tímea
Bernert, Zsolt
Cséki, Andrea
Dani, János
Gallina, József Zsolt
Kocsis-Buruzs, Gábor
Kővári, Ivett
László, Orsolya
Pap, Ildikó
Patay, Róbert
Petkes, Zsolt
Szenthe, Gergely
Szeniczey, Tamás
Hajdu, Tamás
Pinhasi, Ron
author2_role author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
dc.contributor.author.fl_str_mv Sirak, Kendra A
Fernandes, Daniel M.
Cheronet, Olivia
Novak, Mario
Gamarra, Beatriz
Balassa, Tímea
Bernert, Zsolt
Cséki, Andrea
Dani, János
Gallina, József Zsolt
Kocsis-Buruzs, Gábor
Kővári, Ivett
László, Orsolya
Pap, Ildikó
Patay, Róbert
Petkes, Zsolt
Szenthe, Gergely
Szeniczey, Tamás
Hajdu, Tamás
Pinhasi, Ron
dc.subject.por.fl_str_mv cranial base drilling method
petrous bone
ancient DNA
preservation of skeletal remains
Anthropology
DNA, Ancient
Gene Library
Humans
Minimally Invasive Surgical Procedures
Orthopedic Procedures
Petrous Bone
Sequence Analysis, DNA
Skull
Specimen Handling
topic cranial base drilling method
petrous bone
ancient DNA
preservation of skeletal remains
Anthropology
DNA, Ancient
Gene Library
Humans
Minimally Invasive Surgical Procedures
Orthopedic Procedures
Petrous Bone
Sequence Analysis, DNA
Skull
Specimen Handling
description Ancient DNA (aDNA) research involves invasive and destructive sampling procedures that are often incompatible with anthropological, anatomical, and bioarcheological analyses requiring intact skeletal remains. The osseous labyrinth inside the petrous bone has been shown to yield higher amounts of endogenous DNA than any other skeletal element; however, accessing this labyrinth in cases of a complete or reconstructed skull involves causing major structural damage to the cranial vault or base. Here, we describe a novel cranial base drilling method (CBDM) for accessing the osseous labyrinth from the cranial base that prevents damaging the surrounding cranial features, making it highly complementary to morphological analyses. We assessed this method by comparing the aDNA results from one petrous bone processed using our novel method to its pair, which was processed using established protocols for sampling disarticulated petrous bones. We show a decrease in endogenous DNA and molecular copy numbers when the drilling method is used; however, we also show that this method produces more endogenous DNA and higher copy numbers than any postcranial bone. Our results demonstrate that this minimally-invasive method reduces the loss of genetic data associated with the use of other skeletal elements and enables the combined craniometric and genetic study of individuals with archeological, cultural, and evolutionary value.
publishDate 2017
dc.date.none.fl_str_mv 2017-06-01
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv https://hdl.handle.net/10316/108101
https://hdl.handle.net/10316/108101
https://doi.org/10.2144/000114558
url https://hdl.handle.net/10316/108101
https://doi.org/10.2144/000114558
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv 0736-6205
1940-9818
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.publisher.none.fl_str_mv Eaton Publishing Co.
publisher.none.fl_str_mv Eaton Publishing Co.
dc.source.none.fl_str_mv reponame:Repositórios Científicos de Acesso Aberto de Portugal (RCAAP)
instname:FCCN, serviços digitais da FCT – Fundação para a Ciência e a Tecnologia
instacron:RCAAP
instname_str FCCN, serviços digitais da FCT – Fundação para a Ciência e a Tecnologia
instacron_str RCAAP
institution RCAAP
reponame_str Repositórios Científicos de Acesso Aberto de Portugal (RCAAP)
collection Repositórios Científicos de Acesso Aberto de Portugal (RCAAP)
repository.name.fl_str_mv Repositórios Científicos de Acesso Aberto de Portugal (RCAAP) - FCCN, serviços digitais da FCT – Fundação para a Ciência e a Tecnologia
repository.mail.fl_str_mv info@rcaap.pt
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