Realistic 3D infant head surfaces augmentation to improve AI-based diagnosis of cranial deformities

Bibliographic Details
Main Author: Torres, Helena R.
Publication Date: 2022
Other Authors: Oliveira, Bruno, Morais, Pedro André Gonçalves, Fritze, Anne, Rüdiger, Mario, Fonseca, Jaime C., Vilaça, João L.
Format: Article
Language: eng
Source: Repositórios Científicos de Acesso Aberto de Portugal (RCAAP)
Download full: https://hdl.handle.net/1822/90519
Summary: Evaluation of the head shape of newborns is needed to detect cranial deformities, disturbances in head growth, and consequently, to predict short- and long-term neurodevelopment. Currently, there is a lack of automatic tools to provide a detailed evaluation of the head shape. Artificial intelligence (AI) methods, namely deep learning (DL), can be explored to develop fast and automatic approaches for shape evaluation. However, due to the clinical variability of patients’ head anatomy, generalization of AI networks to the clinical needs is paramount and extremely challenging. In this work, a new framework is proposed to augment the 3D data used for training DL networks for shape evaluation. The proposed augmentation strategy deforms head surfaces towards different deformities. For that, a point-based 3D morphable model (p3DMM) is developed to generate a statistical model representative of head shapes of different cranial deformities. Afterward, a constrained transformation approach (3DHT) is applied to warp a head surface towards a target deformity by estimating a dense motion field from a sparse one resulted from the p3DMM. Qualitative evaluation showed that the proposed method generates realistic head shapes indistinguishable from the real ones. Moreover, quantitative experiments demonstrated that DL networks training with the proposed augmented surfaces improves their performance in terms of head shape analysis. Overall, the introduced augmentation allows to effectively transform a given head surface towards different deformity shapes, potentiating the development of DL approaches for head shape analysis.
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spelling Realistic 3D infant head surfaces augmentation to improve AI-based diagnosis of cranial deformities3D data augmentationDeep learningHead deformitiesMorphable modelsMotion transformationScience & TechnologyEvaluation of the head shape of newborns is needed to detect cranial deformities, disturbances in head growth, and consequently, to predict short- and long-term neurodevelopment. Currently, there is a lack of automatic tools to provide a detailed evaluation of the head shape. Artificial intelligence (AI) methods, namely deep learning (DL), can be explored to develop fast and automatic approaches for shape evaluation. However, due to the clinical variability of patients’ head anatomy, generalization of AI networks to the clinical needs is paramount and extremely challenging. In this work, a new framework is proposed to augment the 3D data used for training DL networks for shape evaluation. The proposed augmentation strategy deforms head surfaces towards different deformities. For that, a point-based 3D morphable model (p3DMM) is developed to generate a statistical model representative of head shapes of different cranial deformities. Afterward, a constrained transformation approach (3DHT) is applied to warp a head surface towards a target deformity by estimating a dense motion field from a sparse one resulted from the p3DMM. Qualitative evaluation showed that the proposed method generates realistic head shapes indistinguishable from the real ones. Moreover, quantitative experiments demonstrated that DL networks training with the proposed augmented surfaces improves their performance in terms of head shape analysis. Overall, the introduced augmentation allows to effectively transform a given head surface towards different deformity shapes, potentiating the development of DL approaches for head shape analysis.FCT - Fundação para a Ciência e a Tecnologia(UIDB/00319/2020)ElsevierUniversidade do MinhoTorres, Helena R.Oliveira, BrunoMorais, Pedro André GonçalvesFritze, AnneRüdiger, MarioFonseca, Jaime C.Vilaça, João L.20222022-01-01T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttps://hdl.handle.net/1822/90519engTorres, H. R., Oliveira, B., Morais, P., Fritze, A., Rüdiger, M., Fonseca, J. C., & Vilaça, J. L. (2022, August). Realistic 3D infant head surfaces augmentation to improve AI-based diagnosis of cranial deformities. Journal of Biomedical Informatics. Elsevier BV. http://doi.org/10.1016/j.jbi.2022.1041211532-04641532-048010.1016/j.jbi.2022.1041213575026135750261https://www.sciencedirect.com/science/article/pii/S153204642200137Xinfo:eu-repo/semantics/openAccessreponame:Repositórios Científicos de Acesso Aberto de Portugal (RCAAP)instname:FCCN, serviços digitais da FCT – Fundação para a Ciência e a Tecnologiainstacron:RCAAP2025-04-12T04:47:07Zoai:repositorium.sdum.uminho.pt:1822/90519Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireinfo@rcaap.ptopendoar:https://opendoar.ac.uk/repository/71602025-05-28T15:41:31.797174Repositórios Científicos de Acesso Aberto de Portugal (RCAAP) - FCCN, serviços digitais da FCT – Fundação para a Ciência e a Tecnologiafalse
dc.title.none.fl_str_mv Realistic 3D infant head surfaces augmentation to improve AI-based diagnosis of cranial deformities
title Realistic 3D infant head surfaces augmentation to improve AI-based diagnosis of cranial deformities
spellingShingle Realistic 3D infant head surfaces augmentation to improve AI-based diagnosis of cranial deformities
Torres, Helena R.
3D data augmentation
Deep learning
Head deformities
Morphable models
Motion transformation
Science & Technology
title_short Realistic 3D infant head surfaces augmentation to improve AI-based diagnosis of cranial deformities
title_full Realistic 3D infant head surfaces augmentation to improve AI-based diagnosis of cranial deformities
title_fullStr Realistic 3D infant head surfaces augmentation to improve AI-based diagnosis of cranial deformities
title_full_unstemmed Realistic 3D infant head surfaces augmentation to improve AI-based diagnosis of cranial deformities
title_sort Realistic 3D infant head surfaces augmentation to improve AI-based diagnosis of cranial deformities
author Torres, Helena R.
author_facet Torres, Helena R.
Oliveira, Bruno
Morais, Pedro André Gonçalves
Fritze, Anne
Rüdiger, Mario
Fonseca, Jaime C.
Vilaça, João L.
author_role author
author2 Oliveira, Bruno
Morais, Pedro André Gonçalves
Fritze, Anne
Rüdiger, Mario
Fonseca, Jaime C.
Vilaça, João L.
author2_role author
author
author
author
author
author
dc.contributor.none.fl_str_mv Universidade do Minho
dc.contributor.author.fl_str_mv Torres, Helena R.
Oliveira, Bruno
Morais, Pedro André Gonçalves
Fritze, Anne
Rüdiger, Mario
Fonseca, Jaime C.
Vilaça, João L.
dc.subject.por.fl_str_mv 3D data augmentation
Deep learning
Head deformities
Morphable models
Motion transformation
Science & Technology
topic 3D data augmentation
Deep learning
Head deformities
Morphable models
Motion transformation
Science & Technology
description Evaluation of the head shape of newborns is needed to detect cranial deformities, disturbances in head growth, and consequently, to predict short- and long-term neurodevelopment. Currently, there is a lack of automatic tools to provide a detailed evaluation of the head shape. Artificial intelligence (AI) methods, namely deep learning (DL), can be explored to develop fast and automatic approaches for shape evaluation. However, due to the clinical variability of patients’ head anatomy, generalization of AI networks to the clinical needs is paramount and extremely challenging. In this work, a new framework is proposed to augment the 3D data used for training DL networks for shape evaluation. The proposed augmentation strategy deforms head surfaces towards different deformities. For that, a point-based 3D morphable model (p3DMM) is developed to generate a statistical model representative of head shapes of different cranial deformities. Afterward, a constrained transformation approach (3DHT) is applied to warp a head surface towards a target deformity by estimating a dense motion field from a sparse one resulted from the p3DMM. Qualitative evaluation showed that the proposed method generates realistic head shapes indistinguishable from the real ones. Moreover, quantitative experiments demonstrated that DL networks training with the proposed augmented surfaces improves their performance in terms of head shape analysis. Overall, the introduced augmentation allows to effectively transform a given head surface towards different deformity shapes, potentiating the development of DL approaches for head shape analysis.
publishDate 2022
dc.date.none.fl_str_mv 2022
2022-01-01T00:00:00Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv https://hdl.handle.net/1822/90519
url https://hdl.handle.net/1822/90519
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Torres, H. R., Oliveira, B., Morais, P., Fritze, A., Rüdiger, M., Fonseca, J. C., & Vilaça, J. L. (2022, August). Realistic 3D infant head surfaces augmentation to improve AI-based diagnosis of cranial deformities. Journal of Biomedical Informatics. Elsevier BV. http://doi.org/10.1016/j.jbi.2022.104121
1532-0464
1532-0480
10.1016/j.jbi.2022.104121
35750261
35750261
https://www.sciencedirect.com/science/article/pii/S153204642200137X
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Elsevier
publisher.none.fl_str_mv Elsevier
dc.source.none.fl_str_mv reponame:Repositórios Científicos de Acesso Aberto de Portugal (RCAAP)
instname:FCCN, serviços digitais da FCT – Fundação para a Ciência e a Tecnologia
instacron:RCAAP
instname_str FCCN, serviços digitais da FCT – Fundação para a Ciência e a Tecnologia
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institution RCAAP
reponame_str Repositórios Científicos de Acesso Aberto de Portugal (RCAAP)
collection Repositórios Científicos de Acesso Aberto de Portugal (RCAAP)
repository.name.fl_str_mv Repositórios Científicos de Acesso Aberto de Portugal (RCAAP) - FCCN, serviços digitais da FCT – Fundação para a Ciência e a Tecnologia
repository.mail.fl_str_mv info@rcaap.pt
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