Liquid biopsy for disease monitoring in non-small cell lung cancer: The link between biology and the clinic
Main Author: | |
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Publication Date: | 2021 |
Other Authors: | , , , , , , , , , , , , |
Format: | Article |
Language: | eng |
Source: | Repositórios Científicos de Acesso Aberto de Portugal (RCAAP) |
Download full: | https://hdl.handle.net/10216/153788 |
Summary: | Introduction: Cell-free DNA (cfDNA) analysis offers a non-invasive method to identify sensitising and resistance mutations in advanced Non-Small Cell Lung Cancer (NSCLC) patients. Next-generation sequencing (NGS) of circulating free DNA (cfDNA) is a valuable tool for mutations detection and disease' s clonal monitoring. Material and methods: An amplicon-based targeted gene NGS panel was used to analyse 101 plasma samples of advanced non-small cell lung cancer (NSCLC) patients with known oncogenic mutations, mostly EGFR mutations, serially collected at different clinically relevant time points of the disease. Results: The variant allelic frequency (VAF) monitoring in consecutive plasma samples demonstrated different molecular response and progression patterns. The decrease in or the clearance of the mutant alleles was associated with response and the increase in or the emergence of novel alterations with progression. At the best response, the median VAF was 0% (0.0% to 3.62%), lower than that at baseline, with a median of 0.53% (0.0% to 9.9%) (p = 0.004). At progression, the VAF was significantly higher (median 4.67; range: 0.0–36.9%) than that observed at the best response (p = 0.001) and baseline (p = 0.006). These variations anticipated radiographic changes in most cases, with a median time of 0.86 months. Overall, the VAF evolution of different oncogenic mutations predicts clinical outcomes. Conclusion: The targeted NGS of circulating tumour DNA (ctDNA) has clinical utility to monitor treatment response in patients with advanced lung adenocarcinoma. |
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Liquid biopsy for disease monitoring in non-small cell lung cancer: The link between biology and the clinicAdenocarcinomaCell-free DNAClinical outcomesLiquid biopsyLung cancerNext-generation sequencingTumour-free DNAIntroduction: Cell-free DNA (cfDNA) analysis offers a non-invasive method to identify sensitising and resistance mutations in advanced Non-Small Cell Lung Cancer (NSCLC) patients. Next-generation sequencing (NGS) of circulating free DNA (cfDNA) is a valuable tool for mutations detection and disease' s clonal monitoring. Material and methods: An amplicon-based targeted gene NGS panel was used to analyse 101 plasma samples of advanced non-small cell lung cancer (NSCLC) patients with known oncogenic mutations, mostly EGFR mutations, serially collected at different clinically relevant time points of the disease. Results: The variant allelic frequency (VAF) monitoring in consecutive plasma samples demonstrated different molecular response and progression patterns. The decrease in or the clearance of the mutant alleles was associated with response and the increase in or the emergence of novel alterations with progression. At the best response, the median VAF was 0% (0.0% to 3.62%), lower than that at baseline, with a median of 0.53% (0.0% to 9.9%) (p = 0.004). At progression, the VAF was significantly higher (median 4.67; range: 0.0–36.9%) than that observed at the best response (p = 0.001) and baseline (p = 0.006). These variations anticipated radiographic changes in most cases, with a median time of 0.86 months. Overall, the VAF evolution of different oncogenic mutations predicts clinical outcomes. Conclusion: The targeted NGS of circulating tumour DNA (ctDNA) has clinical utility to monitor treatment response in patients with advanced lung adenocarcinoma.MDPI20212021-01-01T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttps://hdl.handle.net/10216/153788eng2073-440910.3390/cells10081912Fernandes, GSousa, CReis, JMartins, NMoura, CSGuimarães, SJustino, APina, MJMagalhães, AQueiroga, HMarques, JAMachado, JCCosta, JLHespanhol, Vinfo:eu-repo/semantics/openAccessreponame:Repositórios Científicos de Acesso Aberto de Portugal (RCAAP)instname:FCCN, serviços digitais da FCT – Fundação para a Ciência e a Tecnologiainstacron:RCAAP2025-02-27T17:46:44Zoai:repositorio-aberto.up.pt:10216/153788Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireinfo@rcaap.ptopendoar:https://opendoar.ac.uk/repository/71602025-05-28T22:26:21.602634Repositórios Científicos de Acesso Aberto de Portugal (RCAAP) - FCCN, serviços digitais da FCT – Fundação para a Ciência e a Tecnologiafalse |
dc.title.none.fl_str_mv |
Liquid biopsy for disease monitoring in non-small cell lung cancer: The link between biology and the clinic |
title |
Liquid biopsy for disease monitoring in non-small cell lung cancer: The link between biology and the clinic |
spellingShingle |
Liquid biopsy for disease monitoring in non-small cell lung cancer: The link between biology and the clinic Fernandes, G Adenocarcinoma Cell-free DNA Clinical outcomes Liquid biopsy Lung cancer Next-generation sequencing Tumour-free DNA |
title_short |
Liquid biopsy for disease monitoring in non-small cell lung cancer: The link between biology and the clinic |
title_full |
Liquid biopsy for disease monitoring in non-small cell lung cancer: The link between biology and the clinic |
title_fullStr |
Liquid biopsy for disease monitoring in non-small cell lung cancer: The link between biology and the clinic |
title_full_unstemmed |
Liquid biopsy for disease monitoring in non-small cell lung cancer: The link between biology and the clinic |
title_sort |
Liquid biopsy for disease monitoring in non-small cell lung cancer: The link between biology and the clinic |
author |
Fernandes, G |
author_facet |
Fernandes, G Sousa, C Reis, J Martins, N Moura, CS Guimarães, S Justino, A Pina, MJ Magalhães, A Queiroga, H Marques, JA Machado, JC Costa, JL Hespanhol, V |
author_role |
author |
author2 |
Sousa, C Reis, J Martins, N Moura, CS Guimarães, S Justino, A Pina, MJ Magalhães, A Queiroga, H Marques, JA Machado, JC Costa, JL Hespanhol, V |
author2_role |
author author author author author author author author author author author author author |
dc.contributor.author.fl_str_mv |
Fernandes, G Sousa, C Reis, J Martins, N Moura, CS Guimarães, S Justino, A Pina, MJ Magalhães, A Queiroga, H Marques, JA Machado, JC Costa, JL Hespanhol, V |
dc.subject.por.fl_str_mv |
Adenocarcinoma Cell-free DNA Clinical outcomes Liquid biopsy Lung cancer Next-generation sequencing Tumour-free DNA |
topic |
Adenocarcinoma Cell-free DNA Clinical outcomes Liquid biopsy Lung cancer Next-generation sequencing Tumour-free DNA |
description |
Introduction: Cell-free DNA (cfDNA) analysis offers a non-invasive method to identify sensitising and resistance mutations in advanced Non-Small Cell Lung Cancer (NSCLC) patients. Next-generation sequencing (NGS) of circulating free DNA (cfDNA) is a valuable tool for mutations detection and disease' s clonal monitoring. Material and methods: An amplicon-based targeted gene NGS panel was used to analyse 101 plasma samples of advanced non-small cell lung cancer (NSCLC) patients with known oncogenic mutations, mostly EGFR mutations, serially collected at different clinically relevant time points of the disease. Results: The variant allelic frequency (VAF) monitoring in consecutive plasma samples demonstrated different molecular response and progression patterns. The decrease in or the clearance of the mutant alleles was associated with response and the increase in or the emergence of novel alterations with progression. At the best response, the median VAF was 0% (0.0% to 3.62%), lower than that at baseline, with a median of 0.53% (0.0% to 9.9%) (p = 0.004). At progression, the VAF was significantly higher (median 4.67; range: 0.0–36.9%) than that observed at the best response (p = 0.001) and baseline (p = 0.006). These variations anticipated radiographic changes in most cases, with a median time of 0.86 months. Overall, the VAF evolution of different oncogenic mutations predicts clinical outcomes. Conclusion: The targeted NGS of circulating tumour DNA (ctDNA) has clinical utility to monitor treatment response in patients with advanced lung adenocarcinoma. |
publishDate |
2021 |
dc.date.none.fl_str_mv |
2021 2021-01-01T00:00:00Z |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
https://hdl.handle.net/10216/153788 |
url |
https://hdl.handle.net/10216/153788 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
2073-4409 10.3390/cells10081912 |
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info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
application/pdf |
dc.publisher.none.fl_str_mv |
MDPI |
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MDPI |
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Repositórios Científicos de Acesso Aberto de Portugal (RCAAP) |
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Repositórios Científicos de Acesso Aberto de Portugal (RCAAP) - FCCN, serviços digitais da FCT – Fundação para a Ciência e a Tecnologia |
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