COPD profiles and treatable traits using minimal resources: identification, decision tree and stability over time

Bibliographic Details
Main Author: Marques, Alda
Publication Date: 2022
Other Authors: Souto-Miranda, Sara, Machado, Ana, Oliveira, Ana, Jácome, Cristina, Cruz, Joana, Enes, Vera, Afreixo, Vera, Martins, Vitória, Andrade, Lília, Valente, Carla, Ferreira, Diva, Simão, Paula, Brooks, Dina, Tavares, Ana Helena
Format: Article
Language: eng
Source: Repositórios Científicos de Acesso Aberto de Portugal (RCAAP)
Download full: http://hdl.handle.net/10773/33572
Summary: Background and objective: Profiles of people with chronic obstructive pulmonary disease (COPD) often do not describe treatable traits, lack validation and/or their stability over time is unknown. We aimed to identify COPD profiles and their treatable traits based on simple and meaningful measures; to develop and validate a decision tree and to explore profile stability over time. Methods: An observational, prospective study was conducted. Clinical characteristics, lung function, symptoms, impact of the disease (COPD Assessment Test—CAT), health-related quality of life, physical activity, lower-limb muscle strength and functional status were collected cross-sectionally and a subsample was followed-up monthly over six months. A principal component analysis and a clustering procedure with k-medoids were applied to identify profiles. A decision tree was developed and validated cross-sectionally. Stability was explored over time with the ratio between the number of timepoints that a participant was classified in the same profile and the total number of timepoints (i.e., 6). Results: 352 people with COPD (67.4±9.9 years; 78.1% male; FEV1=56.2±20.6% predicted) participated and 90 (67.6±8.9 years; 85.6% male; FEV1=52.1±19.9% predicted) were followed-up. Four profiles were identified with distinct treatable traits. The decision tree included CAT (<18 or≥18 points); age (<65 or≥65 years) and FEV1 (<48 or≥48% predicted) and had an agreement of 71.7% (Cohen’s Kappa=0.62, p<0.001) with the actual profiles. 48.9% of participants remained in the same profile whilst 51.1% moved between two (47.8%) or three (3.3%) profiles over time. Overall stability was 86.8±15%. Conclusion: Four profiles and treatable traits were identified with simple and meaningful measures possibly available in low-resource settings. A decision tree with three commonly used variables in the routine assessment of people with COPD is now available for quick allocation to the identified profiles in clinical practice. Profiles and treatable traits may change over time in people with COPD hence, regular assessments to deliver goal-targeted personalised treatments are needed.
id RCAP_7430d2b0dcce45e566ce87fdbed97a7d
oai_identifier_str oai:ria.ua.pt:10773/33572
network_acronym_str RCAP
network_name_str Repositórios Científicos de Acesso Aberto de Portugal (RCAAP)
repository_id_str https://opendoar.ac.uk/repository/7160
spelling COPD profiles and treatable traits using minimal resources: identification, decision tree and stability over timePhenotypeCluster analysisTreatable traitsDecision treesCOPDBackground and objective: Profiles of people with chronic obstructive pulmonary disease (COPD) often do not describe treatable traits, lack validation and/or their stability over time is unknown. We aimed to identify COPD profiles and their treatable traits based on simple and meaningful measures; to develop and validate a decision tree and to explore profile stability over time. Methods: An observational, prospective study was conducted. Clinical characteristics, lung function, symptoms, impact of the disease (COPD Assessment Test—CAT), health-related quality of life, physical activity, lower-limb muscle strength and functional status were collected cross-sectionally and a subsample was followed-up monthly over six months. A principal component analysis and a clustering procedure with k-medoids were applied to identify profiles. A decision tree was developed and validated cross-sectionally. Stability was explored over time with the ratio between the number of timepoints that a participant was classified in the same profile and the total number of timepoints (i.e., 6). Results: 352 people with COPD (67.4±9.9 years; 78.1% male; FEV1=56.2±20.6% predicted) participated and 90 (67.6±8.9 years; 85.6% male; FEV1=52.1±19.9% predicted) were followed-up. Four profiles were identified with distinct treatable traits. The decision tree included CAT (<18 or≥18 points); age (<65 or≥65 years) and FEV1 (<48 or≥48% predicted) and had an agreement of 71.7% (Cohen’s Kappa=0.62, p<0.001) with the actual profiles. 48.9% of participants remained in the same profile whilst 51.1% moved between two (47.8%) or three (3.3%) profiles over time. Overall stability was 86.8±15%. Conclusion: Four profiles and treatable traits were identified with simple and meaningful measures possibly available in low-resource settings. A decision tree with three commonly used variables in the routine assessment of people with COPD is now available for quick allocation to the identified profiles in clinical practice. Profiles and treatable traits may change over time in people with COPD hence, regular assessments to deliver goal-targeted personalised treatments are needed.BMC2022-03-29T10:10:25Z2022-02-14T00:00:00Z2022-02-14info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://hdl.handle.net/10773/33572eng1465-992110.1186/s12931-022-01954-6Marques, AldaSouto-Miranda, SaraMachado, AnaOliveira, AnaJácome, CristinaCruz, JoanaEnes, VeraAfreixo, VeraMartins, VitóriaAndrade, LíliaValente, CarlaFerreira, DivaSimão, PaulaBrooks, DinaTavares, Ana Helenainfo:eu-repo/semantics/openAccessreponame:Repositórios Científicos de Acesso Aberto de Portugal (RCAAP)instname:FCCN, serviços digitais da FCT – Fundação para a Ciência e a Tecnologiainstacron:RCAAP2024-05-06T04:36:15Zoai:ria.ua.pt:10773/33572Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireinfo@rcaap.ptopendoar:https://opendoar.ac.uk/repository/71602025-05-28T14:14:07.601110Repositórios Científicos de Acesso Aberto de Portugal (RCAAP) - FCCN, serviços digitais da FCT – Fundação para a Ciência e a Tecnologiafalse
dc.title.none.fl_str_mv COPD profiles and treatable traits using minimal resources: identification, decision tree and stability over time
title COPD profiles and treatable traits using minimal resources: identification, decision tree and stability over time
spellingShingle COPD profiles and treatable traits using minimal resources: identification, decision tree and stability over time
Marques, Alda
Phenotype
Cluster analysis
Treatable traits
Decision trees
COPD
title_short COPD profiles and treatable traits using minimal resources: identification, decision tree and stability over time
title_full COPD profiles and treatable traits using minimal resources: identification, decision tree and stability over time
title_fullStr COPD profiles and treatable traits using minimal resources: identification, decision tree and stability over time
title_full_unstemmed COPD profiles and treatable traits using minimal resources: identification, decision tree and stability over time
title_sort COPD profiles and treatable traits using minimal resources: identification, decision tree and stability over time
author Marques, Alda
author_facet Marques, Alda
Souto-Miranda, Sara
Machado, Ana
Oliveira, Ana
Jácome, Cristina
Cruz, Joana
Enes, Vera
Afreixo, Vera
Martins, Vitória
Andrade, Lília
Valente, Carla
Ferreira, Diva
Simão, Paula
Brooks, Dina
Tavares, Ana Helena
author_role author
author2 Souto-Miranda, Sara
Machado, Ana
Oliveira, Ana
Jácome, Cristina
Cruz, Joana
Enes, Vera
Afreixo, Vera
Martins, Vitória
Andrade, Lília
Valente, Carla
Ferreira, Diva
Simão, Paula
Brooks, Dina
Tavares, Ana Helena
author2_role author
author
author
author
author
author
author
author
author
author
author
author
author
author
dc.contributor.author.fl_str_mv Marques, Alda
Souto-Miranda, Sara
Machado, Ana
Oliveira, Ana
Jácome, Cristina
Cruz, Joana
Enes, Vera
Afreixo, Vera
Martins, Vitória
Andrade, Lília
Valente, Carla
Ferreira, Diva
Simão, Paula
Brooks, Dina
Tavares, Ana Helena
dc.subject.por.fl_str_mv Phenotype
Cluster analysis
Treatable traits
Decision trees
COPD
topic Phenotype
Cluster analysis
Treatable traits
Decision trees
COPD
description Background and objective: Profiles of people with chronic obstructive pulmonary disease (COPD) often do not describe treatable traits, lack validation and/or their stability over time is unknown. We aimed to identify COPD profiles and their treatable traits based on simple and meaningful measures; to develop and validate a decision tree and to explore profile stability over time. Methods: An observational, prospective study was conducted. Clinical characteristics, lung function, symptoms, impact of the disease (COPD Assessment Test—CAT), health-related quality of life, physical activity, lower-limb muscle strength and functional status were collected cross-sectionally and a subsample was followed-up monthly over six months. A principal component analysis and a clustering procedure with k-medoids were applied to identify profiles. A decision tree was developed and validated cross-sectionally. Stability was explored over time with the ratio between the number of timepoints that a participant was classified in the same profile and the total number of timepoints (i.e., 6). Results: 352 people with COPD (67.4±9.9 years; 78.1% male; FEV1=56.2±20.6% predicted) participated and 90 (67.6±8.9 years; 85.6% male; FEV1=52.1±19.9% predicted) were followed-up. Four profiles were identified with distinct treatable traits. The decision tree included CAT (<18 or≥18 points); age (<65 or≥65 years) and FEV1 (<48 or≥48% predicted) and had an agreement of 71.7% (Cohen’s Kappa=0.62, p<0.001) with the actual profiles. 48.9% of participants remained in the same profile whilst 51.1% moved between two (47.8%) or three (3.3%) profiles over time. Overall stability was 86.8±15%. Conclusion: Four profiles and treatable traits were identified with simple and meaningful measures possibly available in low-resource settings. A decision tree with three commonly used variables in the routine assessment of people with COPD is now available for quick allocation to the identified profiles in clinical practice. Profiles and treatable traits may change over time in people with COPD hence, regular assessments to deliver goal-targeted personalised treatments are needed.
publishDate 2022
dc.date.none.fl_str_mv 2022-03-29T10:10:25Z
2022-02-14T00:00:00Z
2022-02-14
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://hdl.handle.net/10773/33572
url http://hdl.handle.net/10773/33572
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv 1465-9921
10.1186/s12931-022-01954-6
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv BMC
publisher.none.fl_str_mv BMC
dc.source.none.fl_str_mv reponame:Repositórios Científicos de Acesso Aberto de Portugal (RCAAP)
instname:FCCN, serviços digitais da FCT – Fundação para a Ciência e a Tecnologia
instacron:RCAAP
instname_str FCCN, serviços digitais da FCT – Fundação para a Ciência e a Tecnologia
instacron_str RCAAP
institution RCAAP
reponame_str Repositórios Científicos de Acesso Aberto de Portugal (RCAAP)
collection Repositórios Científicos de Acesso Aberto de Portugal (RCAAP)
repository.name.fl_str_mv Repositórios Científicos de Acesso Aberto de Portugal (RCAAP) - FCCN, serviços digitais da FCT – Fundação para a Ciência e a Tecnologia
repository.mail.fl_str_mv info@rcaap.pt
_version_ 1833594424060280832