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Adjusting ROC curve for Covariates with AROC R package

Bibliographic Details
Main Author: Costa, Francisco Machado e
Publication Date: 2020
Other Authors: Braga, A. C.
Language: eng
Source: Repositórios Científicos de Acesso Aberto de Portugal (RCAAP)
Download full: http://hdl.handle.net/1822/70501
Summary: The ability of a medical test to differentiate between diseased and non-diseased states is of vital importance and must be screened by statistical analysis for reliability and improvement. The receiver operating characteristic (ROC) curve remains a popular method of marker analysis, disease screening and diagnosis. Covariates in this field related to the subject’s characteristics are incorporated in the analysis to avoid bias. The covariate adjusted ROC (AROC) curve was proposed as a method of incorporation. The AROC R-package was recently released and brings various methods of estimation based on multiple authors work. The aim of this study was to explore the AROC package functionality and usability using real data noting its possible limitations. The main methods of the package were capable of incorporating different and multiple variables, both categorical and continuous, in the AROC curve estimation. When tested for the same data, AROC curves are generated with no statistical differences, regardless of method. The package offers a variety of methods to estimate the AROC curve complemented with predictive checks and pooled ROC estimation. The package offers a way to conduct a more thorough ROC and AROC analysis, making it available for any R user.
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spelling Adjusting ROC curve for Covariates with AROC R packageReceiver operator characteristic curveCovariate adjustmentDiagnostic testBiostatisticsSoftware toolScience & TechnologyThe ability of a medical test to differentiate between diseased and non-diseased states is of vital importance and must be screened by statistical analysis for reliability and improvement. The receiver operating characteristic (ROC) curve remains a popular method of marker analysis, disease screening and diagnosis. Covariates in this field related to the subject’s characteristics are incorporated in the analysis to avoid bias. The covariate adjusted ROC (AROC) curve was proposed as a method of incorporation. The AROC R-package was recently released and brings various methods of estimation based on multiple authors work. The aim of this study was to explore the AROC package functionality and usability using real data noting its possible limitations. The main methods of the package were capable of incorporating different and multiple variables, both categorical and continuous, in the AROC curve estimation. When tested for the same data, AROC curves are generated with no statistical differences, regardless of method. The package offers a variety of methods to estimate the AROC curve complemented with predictive checks and pooled ROC estimation. The package offers a way to conduct a more thorough ROC and AROC analysis, making it available for any R user.This work has been supported by FCT - Fundação para a Ciência e Tecnologia within the R&D Units Project Scope: UIDB/00319/2020SpringerUniversidade do MinhoCosta, Francisco Machado eBraga, A. C.20202020-01-01T00:00:00Zconference paperinfo:eu-repo/semantics/publishedVersionapplication/pdfhttp://hdl.handle.net/1822/70501engMachado e Costa F., Braga A.C. (2020) Adjusting ROC Curve for Covariates with AROC R Package. In: Gervasi O. et al. (eds) Computational Science and Its Applications – ICCSA 2020. ICCSA 2020. Lecture Notes in Computer Science, vol 12251. Springer, Cham. https://doi.org/10.1007/978-3-030-58808-3_15978-3-030-58807-60302-974310.1007/978-3-030-58808-3_15info:eu-repo/semantics/openAccessreponame:Repositórios Científicos de Acesso Aberto de Portugal (RCAAP)instname:FCCN, serviços digitais da FCT – Fundação para a Ciência e a Tecnologiainstacron:RCAAP2024-05-11T07:25:29Zoai:repositorium.sdum.uminho.pt:1822/70501Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireinfo@rcaap.ptopendoar:https://opendoar.ac.uk/repository/71602025-05-28T16:26:33.551183Repositórios Científicos de Acesso Aberto de Portugal (RCAAP) - FCCN, serviços digitais da FCT – Fundação para a Ciência e a Tecnologiafalse
dc.title.none.fl_str_mv Adjusting ROC curve for Covariates with AROC R package
title Adjusting ROC curve for Covariates with AROC R package
spellingShingle Adjusting ROC curve for Covariates with AROC R package
Costa, Francisco Machado e
Receiver operator characteristic curve
Covariate adjustment
Diagnostic test
Biostatistics
Software tool
Science & Technology
title_short Adjusting ROC curve for Covariates with AROC R package
title_full Adjusting ROC curve for Covariates with AROC R package
title_fullStr Adjusting ROC curve for Covariates with AROC R package
title_full_unstemmed Adjusting ROC curve for Covariates with AROC R package
title_sort Adjusting ROC curve for Covariates with AROC R package
author Costa, Francisco Machado e
author_facet Costa, Francisco Machado e
Braga, A. C.
author_role author
author2 Braga, A. C.
author2_role author
dc.contributor.none.fl_str_mv Universidade do Minho
dc.contributor.author.fl_str_mv Costa, Francisco Machado e
Braga, A. C.
dc.subject.por.fl_str_mv Receiver operator characteristic curve
Covariate adjustment
Diagnostic test
Biostatistics
Software tool
Science & Technology
topic Receiver operator characteristic curve
Covariate adjustment
Diagnostic test
Biostatistics
Software tool
Science & Technology
description The ability of a medical test to differentiate between diseased and non-diseased states is of vital importance and must be screened by statistical analysis for reliability and improvement. The receiver operating characteristic (ROC) curve remains a popular method of marker analysis, disease screening and diagnosis. Covariates in this field related to the subject’s characteristics are incorporated in the analysis to avoid bias. The covariate adjusted ROC (AROC) curve was proposed as a method of incorporation. The AROC R-package was recently released and brings various methods of estimation based on multiple authors work. The aim of this study was to explore the AROC package functionality and usability using real data noting its possible limitations. The main methods of the package were capable of incorporating different and multiple variables, both categorical and continuous, in the AROC curve estimation. When tested for the same data, AROC curves are generated with no statistical differences, regardless of method. The package offers a variety of methods to estimate the AROC curve complemented with predictive checks and pooled ROC estimation. The package offers a way to conduct a more thorough ROC and AROC analysis, making it available for any R user.
publishDate 2020
dc.date.none.fl_str_mv 2020
2020-01-01T00:00:00Z
dc.type.driver.fl_str_mv conference paper
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://hdl.handle.net/1822/70501
url http://hdl.handle.net/1822/70501
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Machado e Costa F., Braga A.C. (2020) Adjusting ROC Curve for Covariates with AROC R Package. In: Gervasi O. et al. (eds) Computational Science and Its Applications – ICCSA 2020. ICCSA 2020. Lecture Notes in Computer Science, vol 12251. Springer, Cham. https://doi.org/10.1007/978-3-030-58808-3_15
978-3-030-58807-6
0302-9743
10.1007/978-3-030-58808-3_15
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Springer
publisher.none.fl_str_mv Springer
dc.source.none.fl_str_mv reponame:Repositórios Científicos de Acesso Aberto de Portugal (RCAAP)
instname:FCCN, serviços digitais da FCT – Fundação para a Ciência e a Tecnologia
instacron:RCAAP
instname_str FCCN, serviços digitais da FCT – Fundação para a Ciência e a Tecnologia
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