Merlin: metabolic models reconstruction using genome-scale information

Bibliographic Details
Main Author: Dias, Oscar
Publication Date: 2010
Other Authors: Rocha, Miguel, Ferreira, Eugénio C., Rocha, I.
Language: eng
Source: Repositórios Científicos de Acesso Aberto de Portugal (RCAAP)
Download full: https://hdl.handle.net/1822/22314
Summary: This article describes Merlin, a user-friendly program that performs functional genomic annotations of lists of genes. Merlin retrieves information of each homologue and automatically scores the results, allowing the user to change the score selection, and dynamically (re-)annotate the genome. Merlin expedites the transition from genome-scale data to SBML metabolic models, allowing the user to have a preliminary view of the biochemical network.
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network_name_str Repositórios Científicos de Acesso Aberto de Portugal (RCAAP)
repository_id_str https://opendoar.ac.uk/repository/7160
spelling Merlin: metabolic models reconstruction using genome-scale informationSystems biologyGenome-scale reconstructionBLASTSBMLMetabolic engineeringThis article describes Merlin, a user-friendly program that performs functional genomic annotations of lists of genes. Merlin retrieves information of each homologue and automatically scores the results, allowing the user to change the score selection, and dynamically (re-)annotate the genome. Merlin expedites the transition from genome-scale data to SBML metabolic models, allowing the user to have a preliminary view of the biochemical network.FCT -Fundação para a Ciência e a Tecnologia(SFRH/BD/47307/2008)Universidade do MinhoDias, OscarRocha, MiguelFerreira, Eugénio C.Rocha, I.20102010-01-01T00:00:00Zconference paperinfo:eu-repo/semantics/publishedVersionapplication/pdfhttps://hdl.handle.net/1822/22314eng97839026617081474-667010.3182/20100707-3-BE-2012.0076info:eu-repo/semantics/openAccessreponame:Repositórios Científicos de Acesso Aberto de Portugal (RCAAP)instname:FCCN, serviços digitais da FCT – Fundação para a Ciência e a Tecnologiainstacron:RCAAP2024-05-11T04:16:02Zoai:repositorium.sdum.uminho.pt:1822/22314Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireinfo@rcaap.ptopendoar:https://opendoar.ac.uk/repository/71602025-05-28T14:43:46.245823Repositórios Científicos de Acesso Aberto de Portugal (RCAAP) - FCCN, serviços digitais da FCT – Fundação para a Ciência e a Tecnologiafalse
dc.title.none.fl_str_mv Merlin: metabolic models reconstruction using genome-scale information
title Merlin: metabolic models reconstruction using genome-scale information
spellingShingle Merlin: metabolic models reconstruction using genome-scale information
Dias, Oscar
Systems biology
Genome-scale reconstruction
BLAST
SBML
Metabolic engineering
title_short Merlin: metabolic models reconstruction using genome-scale information
title_full Merlin: metabolic models reconstruction using genome-scale information
title_fullStr Merlin: metabolic models reconstruction using genome-scale information
title_full_unstemmed Merlin: metabolic models reconstruction using genome-scale information
title_sort Merlin: metabolic models reconstruction using genome-scale information
author Dias, Oscar
author_facet Dias, Oscar
Rocha, Miguel
Ferreira, Eugénio C.
Rocha, I.
author_role author
author2 Rocha, Miguel
Ferreira, Eugénio C.
Rocha, I.
author2_role author
author
author
dc.contributor.none.fl_str_mv Universidade do Minho
dc.contributor.author.fl_str_mv Dias, Oscar
Rocha, Miguel
Ferreira, Eugénio C.
Rocha, I.
dc.subject.por.fl_str_mv Systems biology
Genome-scale reconstruction
BLAST
SBML
Metabolic engineering
topic Systems biology
Genome-scale reconstruction
BLAST
SBML
Metabolic engineering
description This article describes Merlin, a user-friendly program that performs functional genomic annotations of lists of genes. Merlin retrieves information of each homologue and automatically scores the results, allowing the user to change the score selection, and dynamically (re-)annotate the genome. Merlin expedites the transition from genome-scale data to SBML metabolic models, allowing the user to have a preliminary view of the biochemical network.
publishDate 2010
dc.date.none.fl_str_mv 2010
2010-01-01T00:00:00Z
dc.type.driver.fl_str_mv conference paper
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
status_str publishedVersion
dc.identifier.uri.fl_str_mv https://hdl.handle.net/1822/22314
url https://hdl.handle.net/1822/22314
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv 9783902661708
1474-6670
10.3182/20100707-3-BE-2012.0076
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.source.none.fl_str_mv reponame:Repositórios Científicos de Acesso Aberto de Portugal (RCAAP)
instname:FCCN, serviços digitais da FCT – Fundação para a Ciência e a Tecnologia
instacron:RCAAP
instname_str FCCN, serviços digitais da FCT – Fundação para a Ciência e a Tecnologia
instacron_str RCAAP
institution RCAAP
reponame_str Repositórios Científicos de Acesso Aberto de Portugal (RCAAP)
collection Repositórios Científicos de Acesso Aberto de Portugal (RCAAP)
repository.name.fl_str_mv Repositórios Científicos de Acesso Aberto de Portugal (RCAAP) - FCCN, serviços digitais da FCT – Fundação para a Ciência e a Tecnologia
repository.mail.fl_str_mv info@rcaap.pt
_version_ 1833594848452542464

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