Things Are Getting Hairy: Enterobacteria Bacteriophage vB_PcaM_CBB
Main Author: | |
---|---|
Publication Date: | 2017 |
Other Authors: | , , , , , , , , , , |
Format: | Article |
Language: | eng |
Source: | Repositórios Científicos de Acesso Aberto de Portugal (RCAAP) |
Download full: | http://hdl.handle.net/1822/44461 |
Summary: | Enterobacteria phage vB_PcaM_CBB is a jumbo phage belonging to the family Myoviridae. It possesses highly atypical whisker-like structures along the length of its contractile tail. It has a broad host range with the capability of infecting species of the genera Erwinia, Pectobacterium, and Cronobacter. With a genome of 355,922 bp, excluding a predicted terminal repeat of 22,456 bp, phage CBB is the third largest phage sequenced to date. Its genome was predicted to encode 554 ORFs with 33 tRNAs. Based on prediction and proteome analysis of the virions, 29% of its predicted ORFs could be functionally assigned. Protein comparison shows that CBB shares between 3338% of its proteins with Cronobacter phage GAP32, coliphages PBECO4 and 121Q as well as Klebsiella phage vB_KleM_Rak2. This work presents a detailed and comparative analysis of vB_PcaM_CBB of a highly atypical jumbo myoviridae phage, contributing to a better understanding of phage diversity and biology. |
id |
RCAP_31baaaa08ec969d43c633e4da24b784b |
---|---|
oai_identifier_str |
oai:repositorium.sdum.uminho.pt:1822/44461 |
network_acronym_str |
RCAP |
network_name_str |
Repositórios Científicos de Acesso Aberto de Portugal (RCAAP) |
repository_id_str |
https://opendoar.ac.uk/repository/7160 |
spelling |
Things Are Getting Hairy: Enterobacteria Bacteriophage vB_PcaM_CBBBacteriophagesBioinformaticsGenomeHost rangeJumbo bacteriophageMass spectrometryPFGE analysisTransmission electron microscopyEnterobacteria phage vB_PcaM_CBB is a jumbo phage belonging to the family Myoviridae. It possesses highly atypical whisker-like structures along the length of its contractile tail. It has a broad host range with the capability of infecting species of the genera Erwinia, Pectobacterium, and Cronobacter. With a genome of 355,922 bp, excluding a predicted terminal repeat of 22,456 bp, phage CBB is the third largest phage sequenced to date. Its genome was predicted to encode 554 ORFs with 33 tRNAs. Based on prediction and proteome analysis of the virions, 29% of its predicted ORFs could be functionally assigned. Protein comparison shows that CBB shares between 3338% of its proteins with Cronobacter phage GAP32, coliphages PBECO4 and 121Q as well as Klebsiella phage vB_KleM_Rak2. This work presents a detailed and comparative analysis of vB_PcaM_CBB of a highly atypical jumbo myoviridae phage, contributing to a better understanding of phage diversity and biology.Funding was provided by Cork Institute of Technology as a PhD fellowship to CB.Frontiers MediaUniversidade do MinhoButtimer, ColinHendrix, HanneOliveira, Hugo Alexandre MendesCasey, AidanNeve, HorstMcAuliffe, OliviaRoss, R. PaulHill, ColinNoben, Jean-PaulO'Mahony, JimLavigne, RobCoffey, Aidan20172017-01-01T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://hdl.handle.net/1822/44461engButtimer, Colin; Hendrix, Hanne; Oliveira, Hugo; Casey, Aidan; Neve, Horst; McAuliffe, Olivia; Ross, R. Paul; Hill, Colin; Noben, Jean-Paul; O'Mahony, Jim; Lavigne, Rob; Coffey, Aidan, Things Are Getting Hairy: Enterobacteria Bacteriophage vB_PcaM_CBB. Frontiers in Microbiology, 8(44), 20171664-302X10.3389/fmicb.2017.00044http://journal.frontiersin.org/journal/microbiologyinfo:eu-repo/semantics/openAccessreponame:Repositórios Científicos de Acesso Aberto de Portugal (RCAAP)instname:FCCN, serviços digitais da FCT – Fundação para a Ciência e a Tecnologiainstacron:RCAAP2024-05-11T06:48:14Zoai:repositorium.sdum.uminho.pt:1822/44461Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireinfo@rcaap.ptopendoar:https://opendoar.ac.uk/repository/71602025-05-28T16:04:50.962890Repositórios Científicos de Acesso Aberto de Portugal (RCAAP) - FCCN, serviços digitais da FCT – Fundação para a Ciência e a Tecnologiafalse |
dc.title.none.fl_str_mv |
Things Are Getting Hairy: Enterobacteria Bacteriophage vB_PcaM_CBB |
title |
Things Are Getting Hairy: Enterobacteria Bacteriophage vB_PcaM_CBB |
spellingShingle |
Things Are Getting Hairy: Enterobacteria Bacteriophage vB_PcaM_CBB Buttimer, Colin Bacteriophages Bioinformatics Genome Host range Jumbo bacteriophage Mass spectrometry PFGE analysis Transmission electron microscopy |
title_short |
Things Are Getting Hairy: Enterobacteria Bacteriophage vB_PcaM_CBB |
title_full |
Things Are Getting Hairy: Enterobacteria Bacteriophage vB_PcaM_CBB |
title_fullStr |
Things Are Getting Hairy: Enterobacteria Bacteriophage vB_PcaM_CBB |
title_full_unstemmed |
Things Are Getting Hairy: Enterobacteria Bacteriophage vB_PcaM_CBB |
title_sort |
Things Are Getting Hairy: Enterobacteria Bacteriophage vB_PcaM_CBB |
author |
Buttimer, Colin |
author_facet |
Buttimer, Colin Hendrix, Hanne Oliveira, Hugo Alexandre Mendes Casey, Aidan Neve, Horst McAuliffe, Olivia Ross, R. Paul Hill, Colin Noben, Jean-Paul O'Mahony, Jim Lavigne, Rob Coffey, Aidan |
author_role |
author |
author2 |
Hendrix, Hanne Oliveira, Hugo Alexandre Mendes Casey, Aidan Neve, Horst McAuliffe, Olivia Ross, R. Paul Hill, Colin Noben, Jean-Paul O'Mahony, Jim Lavigne, Rob Coffey, Aidan |
author2_role |
author author author author author author author author author author author |
dc.contributor.none.fl_str_mv |
Universidade do Minho |
dc.contributor.author.fl_str_mv |
Buttimer, Colin Hendrix, Hanne Oliveira, Hugo Alexandre Mendes Casey, Aidan Neve, Horst McAuliffe, Olivia Ross, R. Paul Hill, Colin Noben, Jean-Paul O'Mahony, Jim Lavigne, Rob Coffey, Aidan |
dc.subject.por.fl_str_mv |
Bacteriophages Bioinformatics Genome Host range Jumbo bacteriophage Mass spectrometry PFGE analysis Transmission electron microscopy |
topic |
Bacteriophages Bioinformatics Genome Host range Jumbo bacteriophage Mass spectrometry PFGE analysis Transmission electron microscopy |
description |
Enterobacteria phage vB_PcaM_CBB is a jumbo phage belonging to the family Myoviridae. It possesses highly atypical whisker-like structures along the length of its contractile tail. It has a broad host range with the capability of infecting species of the genera Erwinia, Pectobacterium, and Cronobacter. With a genome of 355,922 bp, excluding a predicted terminal repeat of 22,456 bp, phage CBB is the third largest phage sequenced to date. Its genome was predicted to encode 554 ORFs with 33 tRNAs. Based on prediction and proteome analysis of the virions, 29% of its predicted ORFs could be functionally assigned. Protein comparison shows that CBB shares between 3338% of its proteins with Cronobacter phage GAP32, coliphages PBECO4 and 121Q as well as Klebsiella phage vB_KleM_Rak2. This work presents a detailed and comparative analysis of vB_PcaM_CBB of a highly atypical jumbo myoviridae phage, contributing to a better understanding of phage diversity and biology. |
publishDate |
2017 |
dc.date.none.fl_str_mv |
2017 2017-01-01T00:00:00Z |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://hdl.handle.net/1822/44461 |
url |
http://hdl.handle.net/1822/44461 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
Buttimer, Colin; Hendrix, Hanne; Oliveira, Hugo; Casey, Aidan; Neve, Horst; McAuliffe, Olivia; Ross, R. Paul; Hill, Colin; Noben, Jean-Paul; O'Mahony, Jim; Lavigne, Rob; Coffey, Aidan, Things Are Getting Hairy: Enterobacteria Bacteriophage vB_PcaM_CBB. Frontiers in Microbiology, 8(44), 2017 1664-302X 10.3389/fmicb.2017.00044 http://journal.frontiersin.org/journal/microbiology |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
application/pdf |
dc.publisher.none.fl_str_mv |
Frontiers Media |
publisher.none.fl_str_mv |
Frontiers Media |
dc.source.none.fl_str_mv |
reponame:Repositórios Científicos de Acesso Aberto de Portugal (RCAAP) instname:FCCN, serviços digitais da FCT – Fundação para a Ciência e a Tecnologia instacron:RCAAP |
instname_str |
FCCN, serviços digitais da FCT – Fundação para a Ciência e a Tecnologia |
instacron_str |
RCAAP |
institution |
RCAAP |
reponame_str |
Repositórios Científicos de Acesso Aberto de Portugal (RCAAP) |
collection |
Repositórios Científicos de Acesso Aberto de Portugal (RCAAP) |
repository.name.fl_str_mv |
Repositórios Científicos de Acesso Aberto de Portugal (RCAAP) - FCCN, serviços digitais da FCT – Fundação para a Ciência e a Tecnologia |
repository.mail.fl_str_mv |
info@rcaap.pt |
_version_ |
1833595724988678144 |