POTION: an end-to-end pipeline for positive Darwinian selection detection in genome-scale data through phylogenetic comparison of protein-coding genes.

Bibliographic Details
Main Author: HONGO, J. A.
Publication Date: 2015
Other Authors: CASTRO, G. de, CINTRA, L., ZERLOTINI, A., LOBO, F.
Language: eng
Source: Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
Download full: http://www.alice.cnptia.embrapa.br/alice/handle/doc/1035022
Summary: We present POTION, an open source, modular and end-to-end software for genome-scale detection of positive Darwinian selection in groups of homologous coding sequences. Our software represents a key step towards genome-scale, automated detection of positive selection, from predicted coding sequences and their homology relationships to high-quality groups of positively selected genes.
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network_name_str Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
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spelling POTION: an end-to-end pipeline for positive Darwinian selection detection in genome-scale data through phylogenetic comparison of protein-coding genes.BioinformáticaExpressão gênicaBioinformaticsComputer softwareGene expressionWe present POTION, an open source, modular and end-to-end software for genome-scale detection of positive Darwinian selection in groups of homologous coding sequences. Our software represents a key step towards genome-scale, automated detection of positive selection, from predicted coding sequences and their homology relationships to high-quality groups of positively selected genes.X-meeting 2015.JORGE AUGUSTO HONGO; GIOVANNI DE CASTRO; LEANDRO CARRIJO CINTRA, CNPTIA; ADHEMAR ZERLOTINI NETO, CNPTIA; FRANCISCO PEREIRA LOBO, CNPTIA.HONGO, J. A.CASTRO, G. deCINTRA, L.ZERLOTINI, A.LOBO, F.2016-01-25T11:11:11Z2016-01-25T11:11:11Z2016-01-2520152020-01-21T11:11:11ZResumo em anais e proceedingsinfo:eu-repo/semantics/publishedVersionp. 177.In: INTERNATIONAL CONFERENCE OF THE AB3C, 11.; BRAZILIAN SYMPOSIUM OF BIOINFORMATICS, 2015, São Paulo. Proceedings... [S.l.]: AB3C, 2015.http://www.alice.cnptia.embrapa.br/alice/handle/doc/1035022enginfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)instacron:EMBRAPA2017-08-16T03:34:15Zoai:www.alice.cnptia.embrapa.br:doc/1035022Repositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestcg-riaa@embrapa.bropendoar:21542017-08-16T03:34:15Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)false
dc.title.none.fl_str_mv POTION: an end-to-end pipeline for positive Darwinian selection detection in genome-scale data through phylogenetic comparison of protein-coding genes.
title POTION: an end-to-end pipeline for positive Darwinian selection detection in genome-scale data through phylogenetic comparison of protein-coding genes.
spellingShingle POTION: an end-to-end pipeline for positive Darwinian selection detection in genome-scale data through phylogenetic comparison of protein-coding genes.
HONGO, J. A.
Bioinformática
Expressão gênica
Bioinformatics
Computer software
Gene expression
title_short POTION: an end-to-end pipeline for positive Darwinian selection detection in genome-scale data through phylogenetic comparison of protein-coding genes.
title_full POTION: an end-to-end pipeline for positive Darwinian selection detection in genome-scale data through phylogenetic comparison of protein-coding genes.
title_fullStr POTION: an end-to-end pipeline for positive Darwinian selection detection in genome-scale data through phylogenetic comparison of protein-coding genes.
title_full_unstemmed POTION: an end-to-end pipeline for positive Darwinian selection detection in genome-scale data through phylogenetic comparison of protein-coding genes.
title_sort POTION: an end-to-end pipeline for positive Darwinian selection detection in genome-scale data through phylogenetic comparison of protein-coding genes.
author HONGO, J. A.
author_facet HONGO, J. A.
CASTRO, G. de
CINTRA, L.
ZERLOTINI, A.
LOBO, F.
author_role author
author2 CASTRO, G. de
CINTRA, L.
ZERLOTINI, A.
LOBO, F.
author2_role author
author
author
author
dc.contributor.none.fl_str_mv JORGE AUGUSTO HONGO; GIOVANNI DE CASTRO; LEANDRO CARRIJO CINTRA, CNPTIA; ADHEMAR ZERLOTINI NETO, CNPTIA; FRANCISCO PEREIRA LOBO, CNPTIA.
dc.contributor.author.fl_str_mv HONGO, J. A.
CASTRO, G. de
CINTRA, L.
ZERLOTINI, A.
LOBO, F.
dc.subject.por.fl_str_mv Bioinformática
Expressão gênica
Bioinformatics
Computer software
Gene expression
topic Bioinformática
Expressão gênica
Bioinformatics
Computer software
Gene expression
description We present POTION, an open source, modular and end-to-end software for genome-scale detection of positive Darwinian selection in groups of homologous coding sequences. Our software represents a key step towards genome-scale, automated detection of positive selection, from predicted coding sequences and their homology relationships to high-quality groups of positively selected genes.
publishDate 2015
dc.date.none.fl_str_mv 2015
2016-01-25T11:11:11Z
2016-01-25T11:11:11Z
2016-01-25
2020-01-21T11:11:11Z
dc.type.driver.fl_str_mv Resumo em anais e proceedings
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
status_str publishedVersion
dc.identifier.uri.fl_str_mv In: INTERNATIONAL CONFERENCE OF THE AB3C, 11.; BRAZILIAN SYMPOSIUM OF BIOINFORMATICS, 2015, São Paulo. Proceedings... [S.l.]: AB3C, 2015.
http://www.alice.cnptia.embrapa.br/alice/handle/doc/1035022
identifier_str_mv In: INTERNATIONAL CONFERENCE OF THE AB3C, 11.; BRAZILIAN SYMPOSIUM OF BIOINFORMATICS, 2015, São Paulo. Proceedings... [S.l.]: AB3C, 2015.
url http://www.alice.cnptia.embrapa.br/alice/handle/doc/1035022
dc.language.iso.fl_str_mv eng
language eng
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv p. 177.
dc.source.none.fl_str_mv reponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
instacron:EMBRAPA
instname_str Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
instacron_str EMBRAPA
institution EMBRAPA
reponame_str Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
collection Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
repository.name.fl_str_mv Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
repository.mail.fl_str_mv cg-riaa@embrapa.br
_version_ 1822721173995126784

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