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Rapid epidemic expansion of the SARS-CoV-2 Omicron variant in southern Africa

Bibliographic Details
Main Author: Múltipla Autoria - Ver Em Notas
Publication Date: 2022
Format: Article
Language: eng
Source: Repositório Institucional da FIOCRUZ (ARCA)
DOI: 10.1038/s41586-022-04411-y (2022)
Download full: https://arca.fiocruz.br/handle/icict/51612
Summary: Autor - Múltiplas Autorias- Raquel Viana, Sikhulile Moyo, Daniel G. Amoako, Houriiyah Tegally, Cathrine Scheepers, Christian L. Althaus, Ugochukwu J. Anyaneji, Phillip A. Bester, Maciej F. Boni, Mohammed Chand, Wonderful T. Choga, Rachel Colquhoun, Michaela Davids, Koen Deforche, Deelan Doolabh, Louis du Plessis, Susan Engelbrecht, Josie Everatt, Jennifer Giandhari, Marta Giovanetti, Diana Hardie, Verity Hill, Nei-Yuan Hsiao, Arash Iranzadeh, Arshad Ismail, Charity Joseph, Rageema Joseph, Legodile Koopile, Sergei L. Kosakovsky Pond, Moritz U. G. Kraemer, Lesego Kuate-Lere, Oluwakemi Laguda-Akingba, Onalethatha Lesetedi-Mafoko, Richard J. Lessells, Shahin Lockman, Alexander G. Lucaci, Arisha Maharaj, Boitshoko Mahlangu, Tongai Maponga, Kamela Mahlakwane, Zinhle Makatini, Gert Marais, Dorcas Maruapula, Kereng Masupu, Mogomotsi Matshaba, Simnikiwe Mayaphi, Nokuzola Mbhele, Mpaphi B. Mbulawa, Adriano Mendes, Koleka Mlisana, Anele Mnguni, Thabo Mohale, Monika Moir, Kgomotso Moruisi, Mosepele Mosepele, Gerald Motsatsi, Modisa S. Motswaledi, Thongbotho Mphoyakgosi, Nokukhanya Msomi, Peter N. Mwangi, Yeshnee Naidoo, Noxolo Ntuli, Martin Nyaga, Lucier Olubayo, Sureshnee Pillay, Botshelo Radibe, Yajna Ramphal, Upasana Ramphal, James E. San, Lesley Scott, Roger Shapiro, Lavanya Singh, Pamela Smith-Lawrence, Wendy Stevens, Amy Strydom, Kathleen Subramoney, Naume Tebeila, Derek Tshiabuila, Joseph Tsui, Stephanie van Wyk, Steven Weaver, Constantinos K. Wibmer, Eduan Wilkinson, Nicole Wolter, Alexander E. Zarebski, Boitumelo Zuze, Dominique Goedhals, Wolfgang Preiser, Florette Treurnicht, Marietje Venter, Carolyn Williamson, Oliver G. Pybus, Jinal Bhiman, Allison Glass, Darren P. Martin, Andrew Rambaut, Simani Gaseitsiwe, Anne von Gottberg & Tulio de Oliveira. Afiliaçao - Múltiplas autorias. Autor Fiocruz - Marta Giovanetti. Instituto Oswaldo Cruz. Laboratório de Flavivírus. Rio de Janeiro, RJ, Brasil / Universidade Federal de Minas Gerais. Laboratório de Genética Celular e Molecular. Belo Horizonte, MG, Brasil.
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spelling Múltipla Autoria - Ver Em Notas2022-03-08T12:58:09Z2022-03-08T12:58:09Z2022VIANA, Raquel et al. Rapid epidemic expansion of the SARS-CoV-2 Omicron variant in southern Africa. Nature, p. 1 - 29, Jan. 2022.1476-4687https://arca.fiocruz.br/handle/icict/5161210.1038/s41586-022-04411-y (2022)Autor - Múltiplas Autorias- Raquel Viana, Sikhulile Moyo, Daniel G. Amoako, Houriiyah Tegally, Cathrine Scheepers, Christian L. Althaus, Ugochukwu J. Anyaneji, Phillip A. Bester, Maciej F. Boni, Mohammed Chand, Wonderful T. Choga, Rachel Colquhoun, Michaela Davids, Koen Deforche, Deelan Doolabh, Louis du Plessis, Susan Engelbrecht, Josie Everatt, Jennifer Giandhari, Marta Giovanetti, Diana Hardie, Verity Hill, Nei-Yuan Hsiao, Arash Iranzadeh, Arshad Ismail, Charity Joseph, Rageema Joseph, Legodile Koopile, Sergei L. Kosakovsky Pond, Moritz U. G. Kraemer, Lesego Kuate-Lere, Oluwakemi Laguda-Akingba, Onalethatha Lesetedi-Mafoko, Richard J. Lessells, Shahin Lockman, Alexander G. Lucaci, Arisha Maharaj, Boitshoko Mahlangu, Tongai Maponga, Kamela Mahlakwane, Zinhle Makatini, Gert Marais, Dorcas Maruapula, Kereng Masupu, Mogomotsi Matshaba, Simnikiwe Mayaphi, Nokuzola Mbhele, Mpaphi B. Mbulawa, Adriano Mendes, Koleka Mlisana, Anele Mnguni, Thabo Mohale, Monika Moir, Kgomotso Moruisi, Mosepele Mosepele, Gerald Motsatsi, Modisa S. Motswaledi, Thongbotho Mphoyakgosi, Nokukhanya Msomi, Peter N. Mwangi, Yeshnee Naidoo, Noxolo Ntuli, Martin Nyaga, Lucier Olubayo, Sureshnee Pillay, Botshelo Radibe, Yajna Ramphal, Upasana Ramphal, James E. San, Lesley Scott, Roger Shapiro, Lavanya Singh, Pamela Smith-Lawrence, Wendy Stevens, Amy Strydom, Kathleen Subramoney, Naume Tebeila, Derek Tshiabuila, Joseph Tsui, Stephanie van Wyk, Steven Weaver, Constantinos K. Wibmer, Eduan Wilkinson, Nicole Wolter, Alexander E. Zarebski, Boitumelo Zuze, Dominique Goedhals, Wolfgang Preiser, Florette Treurnicht, Marietje Venter, Carolyn Williamson, Oliver G. Pybus, Jinal Bhiman, Allison Glass, Darren P. Martin, Andrew Rambaut, Simani Gaseitsiwe, Anne von Gottberg & Tulio de Oliveira. Afiliaçao - Múltiplas autorias. Autor Fiocruz - Marta Giovanetti. Instituto Oswaldo Cruz. Laboratório de Flavivírus. Rio de Janeiro, RJ, Brasil / Universidade Federal de Minas Gerais. Laboratório de Genética Celular e Molecular. Belo Horizonte, MG, Brasil.Múltipla - Ver em NotasThe severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) epidemic in southern Africa has been characterised by three distinct waves. The first was associated with a mix of SARS-CoV-2 lineages, whilst the second and third waves were driven by the Beta and Delta variants, respectively1–3. In November 2021, genomic surveillance teams in South Africa and Botswana detected a new SARS-CoV-2 variant associated with a rapid resurgence of infections in Gauteng Province, South Africa. Within three days of the first genome being uploaded, it was designated a variant of concern (Omicron) by the World Health Organization and, within three weeks, had been identified in 87 countries. The Omicron variant is exceptional for carrying over 30 mutations in the spike glycoprotein, predicted to influence antibody neutralization and spike function4. Here, we describe the genomic profile and early transmission dynamics of Omicron, highlighting the rapid spread in regions with high levels of population immunity.engNatureSARS-CoV-2Variante OmicronEpidemiaRápida expansãoÁfrica do SulSARS-CoV-2Omicron variantRapid epidemic expansionSouthern Africa03 Saúde e Bem-EstarRapid epidemic expansion of the SARS-CoV-2 Omicron variant in southern Africainfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleinfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da FIOCRUZ (ARCA)instname:Fundação Oswaldo Cruz (FIOCRUZ)instacron:FIOCRUZLICENSElicense.txtlicense.txttext/plain; charset=utf-82991https://arca.fiocruz.br/bitstreams/f3ad1dc7-90b9-4508-aa74-62b289fc2473/download5a560609d32a3863062d77ff32785d58MD51falseAnonymousREADORIGINALMartaGiovanetti_etal_IOC_2022.pdfMartaGiovanetti_etal_IOC_2022.pdfapplication/pdf33465778https://arca.fiocruz.br/bitstreams/2c412716-8b80-4904-b7c0-545f8264cf8b/download802371d22c7790f020bf91c78e14910bMD52trueAnonymousREADTEXTMartaGiovanetti_etal_IOC_2022.pdf.txtMartaGiovanetti_etal_IOC_2022.pdf.txtExtracted texttext/plain100607https://arca.fiocruz.br/bitstreams/e0fb6a6b-d340-418b-9bc3-2134d77aedb4/download068d02154f6669d54a93abe98bbb2933MD55falseAnonymousREADTHUMBNAILMartaGiovanetti_etal_IOC_2022.pdf.jpgMartaGiovanetti_etal_IOC_2022.pdf.jpgGenerated Thumbnailimage/jpeg5728https://arca.fiocruz.br/bitstreams/453e0fc7-7bfb-4d2d-85ad-0e3a3b61ed87/downloaddf432fde315ec6f48daa4799b8c853c6MD56falseAnonymousREADicict/516122025-07-29 21:21:55.745open.accessoai:arca.fiocruz.br:icict/51612https://arca.fiocruz.brRepositório InstitucionalPUBhttps://www.arca.fiocruz.br/oai/requestrepositorio.arca@fiocruz.bropendoar:21352025-07-30T00:21:55Repositório Institucional da FIOCRUZ (ARCA) - 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dc.title.none.fl_str_mv Rapid epidemic expansion of the SARS-CoV-2 Omicron variant in southern Africa
title Rapid epidemic expansion of the SARS-CoV-2 Omicron variant in southern Africa
spellingShingle Rapid epidemic expansion of the SARS-CoV-2 Omicron variant in southern Africa
Múltipla Autoria - Ver Em Notas
SARS-CoV-2
Variante Omicron
Epidemia
Rápida expansão
África do Sul
SARS-CoV-2
Omicron variant
Rapid epidemic expansion
Southern Africa
03 Saúde e Bem-Estar
title_short Rapid epidemic expansion of the SARS-CoV-2 Omicron variant in southern Africa
title_full Rapid epidemic expansion of the SARS-CoV-2 Omicron variant in southern Africa
title_fullStr Rapid epidemic expansion of the SARS-CoV-2 Omicron variant in southern Africa
title_full_unstemmed Rapid epidemic expansion of the SARS-CoV-2 Omicron variant in southern Africa
title_sort Rapid epidemic expansion of the SARS-CoV-2 Omicron variant in southern Africa
author Múltipla Autoria - Ver Em Notas
author_facet Múltipla Autoria - Ver Em Notas
author_role author
dc.contributor.author.fl_str_mv Múltipla Autoria - Ver Em Notas
dc.subject.other.none.fl_str_mv SARS-CoV-2
Variante Omicron
Epidemia
Rápida expansão
África do Sul
topic SARS-CoV-2
Variante Omicron
Epidemia
Rápida expansão
África do Sul
SARS-CoV-2
Omicron variant
Rapid epidemic expansion
Southern Africa
03 Saúde e Bem-Estar
dc.subject.en.none.fl_str_mv SARS-CoV-2
Omicron variant
Rapid epidemic expansion
Southern Africa
dc.subject.ods.none.fl_str_mv 03 Saúde e Bem-Estar
description Autor - Múltiplas Autorias- Raquel Viana, Sikhulile Moyo, Daniel G. Amoako, Houriiyah Tegally, Cathrine Scheepers, Christian L. Althaus, Ugochukwu J. Anyaneji, Phillip A. Bester, Maciej F. Boni, Mohammed Chand, Wonderful T. Choga, Rachel Colquhoun, Michaela Davids, Koen Deforche, Deelan Doolabh, Louis du Plessis, Susan Engelbrecht, Josie Everatt, Jennifer Giandhari, Marta Giovanetti, Diana Hardie, Verity Hill, Nei-Yuan Hsiao, Arash Iranzadeh, Arshad Ismail, Charity Joseph, Rageema Joseph, Legodile Koopile, Sergei L. Kosakovsky Pond, Moritz U. G. Kraemer, Lesego Kuate-Lere, Oluwakemi Laguda-Akingba, Onalethatha Lesetedi-Mafoko, Richard J. Lessells, Shahin Lockman, Alexander G. Lucaci, Arisha Maharaj, Boitshoko Mahlangu, Tongai Maponga, Kamela Mahlakwane, Zinhle Makatini, Gert Marais, Dorcas Maruapula, Kereng Masupu, Mogomotsi Matshaba, Simnikiwe Mayaphi, Nokuzola Mbhele, Mpaphi B. Mbulawa, Adriano Mendes, Koleka Mlisana, Anele Mnguni, Thabo Mohale, Monika Moir, Kgomotso Moruisi, Mosepele Mosepele, Gerald Motsatsi, Modisa S. Motswaledi, Thongbotho Mphoyakgosi, Nokukhanya Msomi, Peter N. Mwangi, Yeshnee Naidoo, Noxolo Ntuli, Martin Nyaga, Lucier Olubayo, Sureshnee Pillay, Botshelo Radibe, Yajna Ramphal, Upasana Ramphal, James E. San, Lesley Scott, Roger Shapiro, Lavanya Singh, Pamela Smith-Lawrence, Wendy Stevens, Amy Strydom, Kathleen Subramoney, Naume Tebeila, Derek Tshiabuila, Joseph Tsui, Stephanie van Wyk, Steven Weaver, Constantinos K. Wibmer, Eduan Wilkinson, Nicole Wolter, Alexander E. Zarebski, Boitumelo Zuze, Dominique Goedhals, Wolfgang Preiser, Florette Treurnicht, Marietje Venter, Carolyn Williamson, Oliver G. Pybus, Jinal Bhiman, Allison Glass, Darren P. Martin, Andrew Rambaut, Simani Gaseitsiwe, Anne von Gottberg & Tulio de Oliveira. Afiliaçao - Múltiplas autorias. Autor Fiocruz - Marta Giovanetti. Instituto Oswaldo Cruz. Laboratório de Flavivírus. Rio de Janeiro, RJ, Brasil / Universidade Federal de Minas Gerais. Laboratório de Genética Celular e Molecular. Belo Horizonte, MG, Brasil.
publishDate 2022
dc.date.accessioned.fl_str_mv 2022-03-08T12:58:09Z
dc.date.available.fl_str_mv 2022-03-08T12:58:09Z
dc.date.issued.fl_str_mv 2022
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
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dc.identifier.citation.fl_str_mv VIANA, Raquel et al. Rapid epidemic expansion of the SARS-CoV-2 Omicron variant in southern Africa. Nature, p. 1 - 29, Jan. 2022.
dc.identifier.uri.fl_str_mv https://arca.fiocruz.br/handle/icict/51612
dc.identifier.issn.none.fl_str_mv 1476-4687
dc.identifier.doi.none.fl_str_mv 10.1038/s41586-022-04411-y (2022)
identifier_str_mv VIANA, Raquel et al. Rapid epidemic expansion of the SARS-CoV-2 Omicron variant in southern Africa. Nature, p. 1 - 29, Jan. 2022.
1476-4687
10.1038/s41586-022-04411-y (2022)
url https://arca.fiocruz.br/handle/icict/51612
dc.language.iso.fl_str_mv eng
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dc.publisher.none.fl_str_mv Nature
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