Combined expression of JHDM1D/KDM7A gene and long non-coding RNA RP11-363E7.4 as a biomarker for urothelial cancer prognosis.

Detalhes bibliográficos
Autor(a) principal: Silva, Glenda Nicioli da
Data de Publicação: 2024
Outros Autores: Pereira, Isadora Oliveira Ansaloni, Lima, Ana Paula Braga, Almeida, Tamires Cunha, Sávio, André Luiz Ventura, Costa, Renato Prado, Leite, Katia Ramos Moreira, Salvadori, Daisy Maria Fávero
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UFOP
dARK ID: ark:/61566/001300000jr1b
Texto Completo: https://www.repositorio.ufop.br/handle/123456789/19701
https://doi.org/10.1590/1678-4685-GMB-2023-0265
Resumo: Bladder cancer is the tenth most frequently diagnosed cancer globally. Classification of high- or low-grade tumors is based on cytological differentiation and is an important prognostic factor. LncRNAs regulate gene expression and play critical roles in the occurrence and development of cancer, however, there are few reports on their diagnostic value and co-expression levels with genes, which may be useful as specific biomarkers for prognosis and therapy in bladder cancer. Thus, we performed a marker lesion study to investigate whether gene/lncRNA expression in urothelial carcinoma tissues may be useful in differentiating low-grade and high-grade tumors. RT-qPCR was used to evaluate the expression of the JHDM1D gene and the lncRNAs CTD-2132N18.2, SBF2-AS1, RP11-977B10.2, CTD-2510F5.4, and RP11-363E7.4 in 20 histologically diagnosed high-grade and 10 low-grade tumors. A protein-to-protein interaction network between genes associated with JHDM1D gene was constructed using STRING website. The results showed a moderate (positive) correlation between CTD-2510F5.4 and CTD2132N18.2. ROC curve analyses showed that combined JHDM1D and RP11-363E7.4 predicted tumor grade with an AUC of 0.826, showing excellent accuracy. In conclusion, the results indicated that the combined expression of JHDM1D and RP11-363E7.4 may be a prognostic biomarker and a promising target for urothelial tumor therapy.
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spelling Combined expression of JHDM1D/KDM7A gene and long non-coding RNA RP11-363E7.4 as a biomarker for urothelial cancer prognosis.Biomarker-oriented therapyCancer progressionTumor biomarkerGene/lncRNA differential expressionUrothelial carcinomaBladder cancer is the tenth most frequently diagnosed cancer globally. Classification of high- or low-grade tumors is based on cytological differentiation and is an important prognostic factor. LncRNAs regulate gene expression and play critical roles in the occurrence and development of cancer, however, there are few reports on their diagnostic value and co-expression levels with genes, which may be useful as specific biomarkers for prognosis and therapy in bladder cancer. Thus, we performed a marker lesion study to investigate whether gene/lncRNA expression in urothelial carcinoma tissues may be useful in differentiating low-grade and high-grade tumors. RT-qPCR was used to evaluate the expression of the JHDM1D gene and the lncRNAs CTD-2132N18.2, SBF2-AS1, RP11-977B10.2, CTD-2510F5.4, and RP11-363E7.4 in 20 histologically diagnosed high-grade and 10 low-grade tumors. A protein-to-protein interaction network between genes associated with JHDM1D gene was constructed using STRING website. The results showed a moderate (positive) correlation between CTD-2510F5.4 and CTD2132N18.2. ROC curve analyses showed that combined JHDM1D and RP11-363E7.4 predicted tumor grade with an AUC of 0.826, showing excellent accuracy. In conclusion, the results indicated that the combined expression of JHDM1D and RP11-363E7.4 may be a prognostic biomarker and a promising target for urothelial tumor therapy.2025-02-05T17:32:18Z2025-02-05T17:32:18Z2024info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfSILVA, G. N. da et al. Combined expression of JHDM1D/KDM7A gene and long non-coding RNA RP11-363E7.4 as a biomarker for urothelial cancer prognosis. Genetics And Molecular Biology, v. 47, n. 3, artigo e20230265, 2024. Disponível em: <https://www.scielo.br/j/gmb/a/7T5vYwR8rxXVpcpPkcPXfjH/?lang=en>. Acesso em: 07 jan. 2025.1678-4685https://www.repositorio.ufop.br/handle/123456789/19701https://doi.org/10.1590/1678-4685-GMB-2023-0265ark:/61566/001300000jr1bThis is an open-access article distributed under the terms of the Creative Commons Attribution License (type CC-BY), which permits unrestricted use, distribution and reproduction in any medium, provided the original article is properly cited. Fonte: PDF do artigo.info:eu-repo/semantics/openAccessSilva, Glenda Nicioli daPereira, Isadora Oliveira AnsaloniLima, Ana Paula BragaAlmeida, Tamires CunhaSávio, André Luiz VenturaCosta, Renato PradoLeite, Katia Ramos MoreiraSalvadori, Daisy Maria Fáveroengreponame:Repositório Institucional da UFOPinstname:Universidade Federal de Ouro Preto (UFOP)instacron:UFOP2025-02-06T04:39:29Zoai:repositorio.ufop.br:123456789/19701Repositório InstitucionalPUBhttp://www.repositorio.ufop.br/oai/requestrepositorio@ufop.edu.bropendoar:32332025-02-06T04:39:29Repositório Institucional da UFOP - Universidade Federal de Ouro Preto (UFOP)false
dc.title.none.fl_str_mv Combined expression of JHDM1D/KDM7A gene and long non-coding RNA RP11-363E7.4 as a biomarker for urothelial cancer prognosis.
title Combined expression of JHDM1D/KDM7A gene and long non-coding RNA RP11-363E7.4 as a biomarker for urothelial cancer prognosis.
spellingShingle Combined expression of JHDM1D/KDM7A gene and long non-coding RNA RP11-363E7.4 as a biomarker for urothelial cancer prognosis.
Silva, Glenda Nicioli da
Biomarker-oriented therapy
Cancer progression
Tumor biomarker
Gene/lncRNA differential expression
Urothelial carcinoma
title_short Combined expression of JHDM1D/KDM7A gene and long non-coding RNA RP11-363E7.4 as a biomarker for urothelial cancer prognosis.
title_full Combined expression of JHDM1D/KDM7A gene and long non-coding RNA RP11-363E7.4 as a biomarker for urothelial cancer prognosis.
title_fullStr Combined expression of JHDM1D/KDM7A gene and long non-coding RNA RP11-363E7.4 as a biomarker for urothelial cancer prognosis.
title_full_unstemmed Combined expression of JHDM1D/KDM7A gene and long non-coding RNA RP11-363E7.4 as a biomarker for urothelial cancer prognosis.
title_sort Combined expression of JHDM1D/KDM7A gene and long non-coding RNA RP11-363E7.4 as a biomarker for urothelial cancer prognosis.
author Silva, Glenda Nicioli da
author_facet Silva, Glenda Nicioli da
Pereira, Isadora Oliveira Ansaloni
Lima, Ana Paula Braga
Almeida, Tamires Cunha
Sávio, André Luiz Ventura
Costa, Renato Prado
Leite, Katia Ramos Moreira
Salvadori, Daisy Maria Fávero
author_role author
author2 Pereira, Isadora Oliveira Ansaloni
Lima, Ana Paula Braga
Almeida, Tamires Cunha
Sávio, André Luiz Ventura
Costa, Renato Prado
Leite, Katia Ramos Moreira
Salvadori, Daisy Maria Fávero
author2_role author
author
author
author
author
author
author
dc.contributor.author.fl_str_mv Silva, Glenda Nicioli da
Pereira, Isadora Oliveira Ansaloni
Lima, Ana Paula Braga
Almeida, Tamires Cunha
Sávio, André Luiz Ventura
Costa, Renato Prado
Leite, Katia Ramos Moreira
Salvadori, Daisy Maria Fávero
dc.subject.por.fl_str_mv Biomarker-oriented therapy
Cancer progression
Tumor biomarker
Gene/lncRNA differential expression
Urothelial carcinoma
topic Biomarker-oriented therapy
Cancer progression
Tumor biomarker
Gene/lncRNA differential expression
Urothelial carcinoma
description Bladder cancer is the tenth most frequently diagnosed cancer globally. Classification of high- or low-grade tumors is based on cytological differentiation and is an important prognostic factor. LncRNAs regulate gene expression and play critical roles in the occurrence and development of cancer, however, there are few reports on their diagnostic value and co-expression levels with genes, which may be useful as specific biomarkers for prognosis and therapy in bladder cancer. Thus, we performed a marker lesion study to investigate whether gene/lncRNA expression in urothelial carcinoma tissues may be useful in differentiating low-grade and high-grade tumors. RT-qPCR was used to evaluate the expression of the JHDM1D gene and the lncRNAs CTD-2132N18.2, SBF2-AS1, RP11-977B10.2, CTD-2510F5.4, and RP11-363E7.4 in 20 histologically diagnosed high-grade and 10 low-grade tumors. A protein-to-protein interaction network between genes associated with JHDM1D gene was constructed using STRING website. The results showed a moderate (positive) correlation between CTD-2510F5.4 and CTD2132N18.2. ROC curve analyses showed that combined JHDM1D and RP11-363E7.4 predicted tumor grade with an AUC of 0.826, showing excellent accuracy. In conclusion, the results indicated that the combined expression of JHDM1D and RP11-363E7.4 may be a prognostic biomarker and a promising target for urothelial tumor therapy.
publishDate 2024
dc.date.none.fl_str_mv 2024
2025-02-05T17:32:18Z
2025-02-05T17:32:18Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv SILVA, G. N. da et al. Combined expression of JHDM1D/KDM7A gene and long non-coding RNA RP11-363E7.4 as a biomarker for urothelial cancer prognosis. Genetics And Molecular Biology, v. 47, n. 3, artigo e20230265, 2024. Disponível em: <https://www.scielo.br/j/gmb/a/7T5vYwR8rxXVpcpPkcPXfjH/?lang=en>. Acesso em: 07 jan. 2025.
1678-4685
https://www.repositorio.ufop.br/handle/123456789/19701
https://doi.org/10.1590/1678-4685-GMB-2023-0265
dc.identifier.dark.fl_str_mv ark:/61566/001300000jr1b
identifier_str_mv SILVA, G. N. da et al. Combined expression of JHDM1D/KDM7A gene and long non-coding RNA RP11-363E7.4 as a biomarker for urothelial cancer prognosis. Genetics And Molecular Biology, v. 47, n. 3, artigo e20230265, 2024. Disponível em: <https://www.scielo.br/j/gmb/a/7T5vYwR8rxXVpcpPkcPXfjH/?lang=en>. Acesso em: 07 jan. 2025.
1678-4685
ark:/61566/001300000jr1b
url https://www.repositorio.ufop.br/handle/123456789/19701
https://doi.org/10.1590/1678-4685-GMB-2023-0265
dc.language.iso.fl_str_mv eng
language eng
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.source.none.fl_str_mv reponame:Repositório Institucional da UFOP
instname:Universidade Federal de Ouro Preto (UFOP)
instacron:UFOP
instname_str Universidade Federal de Ouro Preto (UFOP)
instacron_str UFOP
institution UFOP
reponame_str Repositório Institucional da UFOP
collection Repositório Institucional da UFOP
repository.name.fl_str_mv Repositório Institucional da UFOP - Universidade Federal de Ouro Preto (UFOP)
repository.mail.fl_str_mv repositorio@ufop.edu.br
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