Structural Elucidation, DFT Calculations, Hirshfeld Surface Analysis, Molecular Dynamics Simulation, ADMET Profiles, and Molecular Docking of Two Benzazocine Derivatives NAOP-12 and NEMKH-12

Detalhes bibliográficos
Autor(a) principal: Hasan, Tanveer
Data de Publicação: 2025
Outros Autores: Ghalib, Raza Murad, Mehdi, Sayed Hasan, Tazeem, Kazmi , Nazia
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Orbital - The Electronic Journal of Chemistry (Campo Grande)
Texto Completo: https://periodicos.ufms.br/index.php/orbital/article/view/20314
Resumo: In this study two novel benzazocine derivatives containing potentially anticancer properties, (a) NAOP-12 (C24H16N4) & (b) NEMKH-12 (C25H18N4), were investigated utilizing quantum computational technique. The equilibrium geometries of the compounds have been obtained and analyzed using the DFT-B3LYP/6-311++G(d,p) method. FT-IR analysis was used to identify the various functional groups, and the results are compared to the simulated spectra. The oscillation modes were examined theoretically. The electronic properties such as HOMO and LUMO energies and associated frontier energy band gap were calculated. Molecular Electrostatic Potential predictions are done to analyze the electrophilic and nucleophilic centers. Electrical parameters like dipole moment, molecular polarizability and first static hyperpolarizability, have been utilized to predict the biological nature and non-linear optical (NLO) behavior of the molecules. Chemically active sites are described using Fukui functions, chemical softness, and other descriptors. The Hirshfeld surface analysis has been performed to investigate the weak interactions in the molecules. A 500 ns molecular dynamics simulation was conducted, evaluating models using RMSD, RMSF, Rg, SASA metrics and the gmxMMPBSA tool was utilized for free energy calculations. The molecular docking analysis has been performed with the fusion proteins 6J7A and 6J7I. The drug-likeness and ADMET parameters were computed to investigate their pharmaceutical behavior.
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spelling Structural Elucidation, DFT Calculations, Hirshfeld Surface Analysis, Molecular Dynamics Simulation, ADMET Profiles, and Molecular Docking of Two Benzazocine Derivatives NAOP-12 and NEMKH-12Molecular DynamicsMolecular DockingADMETDFTFukui functionsHirshfeld surfaceIn this study two novel benzazocine derivatives containing potentially anticancer properties, (a) NAOP-12 (C24H16N4) & (b) NEMKH-12 (C25H18N4), were investigated utilizing quantum computational technique. The equilibrium geometries of the compounds have been obtained and analyzed using the DFT-B3LYP/6-311++G(d,p) method. FT-IR analysis was used to identify the various functional groups, and the results are compared to the simulated spectra. The oscillation modes were examined theoretically. The electronic properties such as HOMO and LUMO energies and associated frontier energy band gap were calculated. Molecular Electrostatic Potential predictions are done to analyze the electrophilic and nucleophilic centers. Electrical parameters like dipole moment, molecular polarizability and first static hyperpolarizability, have been utilized to predict the biological nature and non-linear optical (NLO) behavior of the molecules. Chemically active sites are described using Fukui functions, chemical softness, and other descriptors. The Hirshfeld surface analysis has been performed to investigate the weak interactions in the molecules. A 500 ns molecular dynamics simulation was conducted, evaluating models using RMSD, RMSF, Rg, SASA metrics and the gmxMMPBSA tool was utilized for free energy calculations. The molecular docking analysis has been performed with the fusion proteins 6J7A and 6J7I. The drug-likeness and ADMET parameters were computed to investigate their pharmaceutical behavior.Instituto de Química, Universidade Federal de Mato Grosso do Sul2025-04-27info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionPeer-reviewed Articleapplication/pdfapplication/pdfhttps://periodicos.ufms.br/index.php/orbital/article/view/2031410.17807/orbital.v17i1.20314Orbital: The Electronic Journal of Chemistry; Orbital - Vol. 17 No. 1 - January-March 2025; 35-49Orbital: The Electronic Journal of Chemistry; Orbital - Vol. 17 No. 1 - January-March 2025; 35-491984-6428reponame:Orbital - The Electronic Journal of Chemistry (Campo Grande)instname:Universidade Federal de Mato Grosso do Sul (UFMS)instacron:UFMSenghttps://periodicos.ufms.br/index.php/orbital/article/view/20314/15408https://periodicos.ufms.br/index.php/orbital/article/view/20314/15410Copyright (c) 2025 Orbital: The Electronic Journal of Chemistryhttps://creativecommons.org/licenses/by-nc-nd/4.0info:eu-repo/semantics/openAccessHasan, TanveerGhalib, Raza Murad Mehdi, Sayed Hasan TazeemKazmi , Nazia 2025-05-27T16:27:09Zoai:periodicos.ufms.br:article/20314Revistahttps://periodicos.ufms.br/index.php/orbital/indexPUBhttps://periodicos.ufms.br/index.php/orbital/oaieditor.orbital@ufms.br || marcos.amaral@ufms.br1984-64281984-6428opendoar:2025-05-27T16:27:09Orbital - The Electronic Journal of Chemistry (Campo Grande) - Universidade Federal de Mato Grosso do Sul (UFMS)false
dc.title.none.fl_str_mv Structural Elucidation, DFT Calculations, Hirshfeld Surface Analysis, Molecular Dynamics Simulation, ADMET Profiles, and Molecular Docking of Two Benzazocine Derivatives NAOP-12 and NEMKH-12
title Structural Elucidation, DFT Calculations, Hirshfeld Surface Analysis, Molecular Dynamics Simulation, ADMET Profiles, and Molecular Docking of Two Benzazocine Derivatives NAOP-12 and NEMKH-12
spellingShingle Structural Elucidation, DFT Calculations, Hirshfeld Surface Analysis, Molecular Dynamics Simulation, ADMET Profiles, and Molecular Docking of Two Benzazocine Derivatives NAOP-12 and NEMKH-12
Hasan, Tanveer
Molecular Dynamics
Molecular Docking
ADMET
DFT
Fukui functions
Hirshfeld surface
title_short Structural Elucidation, DFT Calculations, Hirshfeld Surface Analysis, Molecular Dynamics Simulation, ADMET Profiles, and Molecular Docking of Two Benzazocine Derivatives NAOP-12 and NEMKH-12
title_full Structural Elucidation, DFT Calculations, Hirshfeld Surface Analysis, Molecular Dynamics Simulation, ADMET Profiles, and Molecular Docking of Two Benzazocine Derivatives NAOP-12 and NEMKH-12
title_fullStr Structural Elucidation, DFT Calculations, Hirshfeld Surface Analysis, Molecular Dynamics Simulation, ADMET Profiles, and Molecular Docking of Two Benzazocine Derivatives NAOP-12 and NEMKH-12
title_full_unstemmed Structural Elucidation, DFT Calculations, Hirshfeld Surface Analysis, Molecular Dynamics Simulation, ADMET Profiles, and Molecular Docking of Two Benzazocine Derivatives NAOP-12 and NEMKH-12
title_sort Structural Elucidation, DFT Calculations, Hirshfeld Surface Analysis, Molecular Dynamics Simulation, ADMET Profiles, and Molecular Docking of Two Benzazocine Derivatives NAOP-12 and NEMKH-12
author Hasan, Tanveer
author_facet Hasan, Tanveer
Ghalib, Raza Murad
Mehdi, Sayed Hasan
Tazeem
Kazmi , Nazia
author_role author
author2 Ghalib, Raza Murad
Mehdi, Sayed Hasan
Tazeem
Kazmi , Nazia
author2_role author
author
author
author
dc.contributor.author.fl_str_mv Hasan, Tanveer
Ghalib, Raza Murad
Mehdi, Sayed Hasan
Tazeem
Kazmi , Nazia
dc.subject.por.fl_str_mv Molecular Dynamics
Molecular Docking
ADMET
DFT
Fukui functions
Hirshfeld surface
topic Molecular Dynamics
Molecular Docking
ADMET
DFT
Fukui functions
Hirshfeld surface
description In this study two novel benzazocine derivatives containing potentially anticancer properties, (a) NAOP-12 (C24H16N4) & (b) NEMKH-12 (C25H18N4), were investigated utilizing quantum computational technique. The equilibrium geometries of the compounds have been obtained and analyzed using the DFT-B3LYP/6-311++G(d,p) method. FT-IR analysis was used to identify the various functional groups, and the results are compared to the simulated spectra. The oscillation modes were examined theoretically. The electronic properties such as HOMO and LUMO energies and associated frontier energy band gap were calculated. Molecular Electrostatic Potential predictions are done to analyze the electrophilic and nucleophilic centers. Electrical parameters like dipole moment, molecular polarizability and first static hyperpolarizability, have been utilized to predict the biological nature and non-linear optical (NLO) behavior of the molecules. Chemically active sites are described using Fukui functions, chemical softness, and other descriptors. The Hirshfeld surface analysis has been performed to investigate the weak interactions in the molecules. A 500 ns molecular dynamics simulation was conducted, evaluating models using RMSD, RMSF, Rg, SASA metrics and the gmxMMPBSA tool was utilized for free energy calculations. The molecular docking analysis has been performed with the fusion proteins 6J7A and 6J7I. The drug-likeness and ADMET parameters were computed to investigate their pharmaceutical behavior.
publishDate 2025
dc.date.none.fl_str_mv 2025-04-27
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
Peer-reviewed Article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv https://periodicos.ufms.br/index.php/orbital/article/view/20314
10.17807/orbital.v17i1.20314
url https://periodicos.ufms.br/index.php/orbital/article/view/20314
identifier_str_mv 10.17807/orbital.v17i1.20314
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv https://periodicos.ufms.br/index.php/orbital/article/view/20314/15408
https://periodicos.ufms.br/index.php/orbital/article/view/20314/15410
dc.rights.driver.fl_str_mv Copyright (c) 2025 Orbital: The Electronic Journal of Chemistry
https://creativecommons.org/licenses/by-nc-nd/4.0
info:eu-repo/semantics/openAccess
rights_invalid_str_mv Copyright (c) 2025 Orbital: The Electronic Journal of Chemistry
https://creativecommons.org/licenses/by-nc-nd/4.0
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
application/pdf
dc.publisher.none.fl_str_mv Instituto de Química, Universidade Federal de Mato Grosso do Sul
publisher.none.fl_str_mv Instituto de Química, Universidade Federal de Mato Grosso do Sul
dc.source.none.fl_str_mv Orbital: The Electronic Journal of Chemistry; Orbital - Vol. 17 No. 1 - January-March 2025; 35-49
Orbital: The Electronic Journal of Chemistry; Orbital - Vol. 17 No. 1 - January-March 2025; 35-49
1984-6428
reponame:Orbital - The Electronic Journal of Chemistry (Campo Grande)
instname:Universidade Federal de Mato Grosso do Sul (UFMS)
instacron:UFMS
instname_str Universidade Federal de Mato Grosso do Sul (UFMS)
instacron_str UFMS
institution UFMS
reponame_str Orbital - The Electronic Journal of Chemistry (Campo Grande)
collection Orbital - The Electronic Journal of Chemistry (Campo Grande)
repository.name.fl_str_mv Orbital - The Electronic Journal of Chemistry (Campo Grande) - Universidade Federal de Mato Grosso do Sul (UFMS)
repository.mail.fl_str_mv editor.orbital@ufms.br || marcos.amaral@ufms.br
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