Structural Elucidation, DFT Calculations, Hirshfeld Surface Analysis, Molecular Dynamics Simulation, ADMET Profiles, and Molecular Docking of Two Benzazocine Derivatives NAOP-12 and NEMKH-12
Autor(a) principal: | |
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Data de Publicação: | 2025 |
Outros Autores: | , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Orbital - The Electronic Journal of Chemistry (Campo Grande) |
Texto Completo: | https://periodicos.ufms.br/index.php/orbital/article/view/20314 |
Resumo: | In this study two novel benzazocine derivatives containing potentially anticancer properties, (a) NAOP-12 (C24H16N4) & (b) NEMKH-12 (C25H18N4), were investigated utilizing quantum computational technique. The equilibrium geometries of the compounds have been obtained and analyzed using the DFT-B3LYP/6-311++G(d,p) method. FT-IR analysis was used to identify the various functional groups, and the results are compared to the simulated spectra. The oscillation modes were examined theoretically. The electronic properties such as HOMO and LUMO energies and associated frontier energy band gap were calculated. Molecular Electrostatic Potential predictions are done to analyze the electrophilic and nucleophilic centers. Electrical parameters like dipole moment, molecular polarizability and first static hyperpolarizability, have been utilized to predict the biological nature and non-linear optical (NLO) behavior of the molecules. Chemically active sites are described using Fukui functions, chemical softness, and other descriptors. The Hirshfeld surface analysis has been performed to investigate the weak interactions in the molecules. A 500 ns molecular dynamics simulation was conducted, evaluating models using RMSD, RMSF, Rg, SASA metrics and the gmxMMPBSA tool was utilized for free energy calculations. The molecular docking analysis has been performed with the fusion proteins 6J7A and 6J7I. The drug-likeness and ADMET parameters were computed to investigate their pharmaceutical behavior. |
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Structural Elucidation, DFT Calculations, Hirshfeld Surface Analysis, Molecular Dynamics Simulation, ADMET Profiles, and Molecular Docking of Two Benzazocine Derivatives NAOP-12 and NEMKH-12Molecular DynamicsMolecular DockingADMETDFTFukui functionsHirshfeld surfaceIn this study two novel benzazocine derivatives containing potentially anticancer properties, (a) NAOP-12 (C24H16N4) & (b) NEMKH-12 (C25H18N4), were investigated utilizing quantum computational technique. The equilibrium geometries of the compounds have been obtained and analyzed using the DFT-B3LYP/6-311++G(d,p) method. FT-IR analysis was used to identify the various functional groups, and the results are compared to the simulated spectra. The oscillation modes were examined theoretically. The electronic properties such as HOMO and LUMO energies and associated frontier energy band gap were calculated. Molecular Electrostatic Potential predictions are done to analyze the electrophilic and nucleophilic centers. Electrical parameters like dipole moment, molecular polarizability and first static hyperpolarizability, have been utilized to predict the biological nature and non-linear optical (NLO) behavior of the molecules. Chemically active sites are described using Fukui functions, chemical softness, and other descriptors. The Hirshfeld surface analysis has been performed to investigate the weak interactions in the molecules. A 500 ns molecular dynamics simulation was conducted, evaluating models using RMSD, RMSF, Rg, SASA metrics and the gmxMMPBSA tool was utilized for free energy calculations. The molecular docking analysis has been performed with the fusion proteins 6J7A and 6J7I. The drug-likeness and ADMET parameters were computed to investigate their pharmaceutical behavior.Instituto de Química, Universidade Federal de Mato Grosso do Sul2025-04-27info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionPeer-reviewed Articleapplication/pdfapplication/pdfhttps://periodicos.ufms.br/index.php/orbital/article/view/2031410.17807/orbital.v17i1.20314Orbital: The Electronic Journal of Chemistry; Orbital - Vol. 17 No. 1 - January-March 2025; 35-49Orbital: The Electronic Journal of Chemistry; Orbital - Vol. 17 No. 1 - January-March 2025; 35-491984-6428reponame:Orbital - The Electronic Journal of Chemistry (Campo Grande)instname:Universidade Federal de Mato Grosso do Sul (UFMS)instacron:UFMSenghttps://periodicos.ufms.br/index.php/orbital/article/view/20314/15408https://periodicos.ufms.br/index.php/orbital/article/view/20314/15410Copyright (c) 2025 Orbital: The Electronic Journal of Chemistryhttps://creativecommons.org/licenses/by-nc-nd/4.0info:eu-repo/semantics/openAccessHasan, TanveerGhalib, Raza Murad Mehdi, Sayed Hasan TazeemKazmi , Nazia 2025-05-27T16:27:09Zoai:periodicos.ufms.br:article/20314Revistahttps://periodicos.ufms.br/index.php/orbital/indexPUBhttps://periodicos.ufms.br/index.php/orbital/oaieditor.orbital@ufms.br || marcos.amaral@ufms.br1984-64281984-6428opendoar:2025-05-27T16:27:09Orbital - The Electronic Journal of Chemistry (Campo Grande) - Universidade Federal de Mato Grosso do Sul (UFMS)false |
dc.title.none.fl_str_mv |
Structural Elucidation, DFT Calculations, Hirshfeld Surface Analysis, Molecular Dynamics Simulation, ADMET Profiles, and Molecular Docking of Two Benzazocine Derivatives NAOP-12 and NEMKH-12 |
title |
Structural Elucidation, DFT Calculations, Hirshfeld Surface Analysis, Molecular Dynamics Simulation, ADMET Profiles, and Molecular Docking of Two Benzazocine Derivatives NAOP-12 and NEMKH-12 |
spellingShingle |
Structural Elucidation, DFT Calculations, Hirshfeld Surface Analysis, Molecular Dynamics Simulation, ADMET Profiles, and Molecular Docking of Two Benzazocine Derivatives NAOP-12 and NEMKH-12 Hasan, Tanveer Molecular Dynamics Molecular Docking ADMET DFT Fukui functions Hirshfeld surface |
title_short |
Structural Elucidation, DFT Calculations, Hirshfeld Surface Analysis, Molecular Dynamics Simulation, ADMET Profiles, and Molecular Docking of Two Benzazocine Derivatives NAOP-12 and NEMKH-12 |
title_full |
Structural Elucidation, DFT Calculations, Hirshfeld Surface Analysis, Molecular Dynamics Simulation, ADMET Profiles, and Molecular Docking of Two Benzazocine Derivatives NAOP-12 and NEMKH-12 |
title_fullStr |
Structural Elucidation, DFT Calculations, Hirshfeld Surface Analysis, Molecular Dynamics Simulation, ADMET Profiles, and Molecular Docking of Two Benzazocine Derivatives NAOP-12 and NEMKH-12 |
title_full_unstemmed |
Structural Elucidation, DFT Calculations, Hirshfeld Surface Analysis, Molecular Dynamics Simulation, ADMET Profiles, and Molecular Docking of Two Benzazocine Derivatives NAOP-12 and NEMKH-12 |
title_sort |
Structural Elucidation, DFT Calculations, Hirshfeld Surface Analysis, Molecular Dynamics Simulation, ADMET Profiles, and Molecular Docking of Two Benzazocine Derivatives NAOP-12 and NEMKH-12 |
author |
Hasan, Tanveer |
author_facet |
Hasan, Tanveer Ghalib, Raza Murad Mehdi, Sayed Hasan Tazeem Kazmi , Nazia |
author_role |
author |
author2 |
Ghalib, Raza Murad Mehdi, Sayed Hasan Tazeem Kazmi , Nazia |
author2_role |
author author author author |
dc.contributor.author.fl_str_mv |
Hasan, Tanveer Ghalib, Raza Murad Mehdi, Sayed Hasan Tazeem Kazmi , Nazia |
dc.subject.por.fl_str_mv |
Molecular Dynamics Molecular Docking ADMET DFT Fukui functions Hirshfeld surface |
topic |
Molecular Dynamics Molecular Docking ADMET DFT Fukui functions Hirshfeld surface |
description |
In this study two novel benzazocine derivatives containing potentially anticancer properties, (a) NAOP-12 (C24H16N4) & (b) NEMKH-12 (C25H18N4), were investigated utilizing quantum computational technique. The equilibrium geometries of the compounds have been obtained and analyzed using the DFT-B3LYP/6-311++G(d,p) method. FT-IR analysis was used to identify the various functional groups, and the results are compared to the simulated spectra. The oscillation modes were examined theoretically. The electronic properties such as HOMO and LUMO energies and associated frontier energy band gap were calculated. Molecular Electrostatic Potential predictions are done to analyze the electrophilic and nucleophilic centers. Electrical parameters like dipole moment, molecular polarizability and first static hyperpolarizability, have been utilized to predict the biological nature and non-linear optical (NLO) behavior of the molecules. Chemically active sites are described using Fukui functions, chemical softness, and other descriptors. The Hirshfeld surface analysis has been performed to investigate the weak interactions in the molecules. A 500 ns molecular dynamics simulation was conducted, evaluating models using RMSD, RMSF, Rg, SASA metrics and the gmxMMPBSA tool was utilized for free energy calculations. The molecular docking analysis has been performed with the fusion proteins 6J7A and 6J7I. The drug-likeness and ADMET parameters were computed to investigate their pharmaceutical behavior. |
publishDate |
2025 |
dc.date.none.fl_str_mv |
2025-04-27 |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article info:eu-repo/semantics/publishedVersion Peer-reviewed Article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
https://periodicos.ufms.br/index.php/orbital/article/view/20314 10.17807/orbital.v17i1.20314 |
url |
https://periodicos.ufms.br/index.php/orbital/article/view/20314 |
identifier_str_mv |
10.17807/orbital.v17i1.20314 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
https://periodicos.ufms.br/index.php/orbital/article/view/20314/15408 https://periodicos.ufms.br/index.php/orbital/article/view/20314/15410 |
dc.rights.driver.fl_str_mv |
Copyright (c) 2025 Orbital: The Electronic Journal of Chemistry https://creativecommons.org/licenses/by-nc-nd/4.0 info:eu-repo/semantics/openAccess |
rights_invalid_str_mv |
Copyright (c) 2025 Orbital: The Electronic Journal of Chemistry https://creativecommons.org/licenses/by-nc-nd/4.0 |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
application/pdf application/pdf |
dc.publisher.none.fl_str_mv |
Instituto de Química, Universidade Federal de Mato Grosso do Sul |
publisher.none.fl_str_mv |
Instituto de Química, Universidade Federal de Mato Grosso do Sul |
dc.source.none.fl_str_mv |
Orbital: The Electronic Journal of Chemistry; Orbital - Vol. 17 No. 1 - January-March 2025; 35-49 Orbital: The Electronic Journal of Chemistry; Orbital - Vol. 17 No. 1 - January-March 2025; 35-49 1984-6428 reponame:Orbital - The Electronic Journal of Chemistry (Campo Grande) instname:Universidade Federal de Mato Grosso do Sul (UFMS) instacron:UFMS |
instname_str |
Universidade Federal de Mato Grosso do Sul (UFMS) |
instacron_str |
UFMS |
institution |
UFMS |
reponame_str |
Orbital - The Electronic Journal of Chemistry (Campo Grande) |
collection |
Orbital - The Electronic Journal of Chemistry (Campo Grande) |
repository.name.fl_str_mv |
Orbital - The Electronic Journal of Chemistry (Campo Grande) - Universidade Federal de Mato Grosso do Sul (UFMS) |
repository.mail.fl_str_mv |
editor.orbital@ufms.br || marcos.amaral@ufms.br |
_version_ |
1839717928861171712 |