Analysis and visualization of chromosome information

Bibliographic Details
Main Author: Costa, António Cardoso
Publication Date: 2012
Other Authors: Machado, J. A. Tenreiro, Quelhas, Dulce
Format: Article
Language: eng
Source: Repositórios Científicos de Acesso Aberto de Portugal (RCAAP)
Download full: http://hdl.handle.net/10400.22/1438
Summary: This paper analyzes the DNA code of several species in the perspective of information content. For that purpose several concepts and mathematical tools are selected towards establishing a quantitative method without a priori distorting the alphabet represented by the sequence of DNA bases. The synergies of associating Gray code, histogram characterization and multidimensional scaling visualization lead to a collection of plots with a categorical representation of species and chromosomes.
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spelling Analysis and visualization of chromosome informationDNAChromosomePhylogeneticsMDSCorrelationVisualizationThis paper analyzes the DNA code of several species in the perspective of information content. For that purpose several concepts and mathematical tools are selected towards establishing a quantitative method without a priori distorting the alphabet represented by the sequence of DNA bases. The synergies of associating Gray code, histogram characterization and multidimensional scaling visualization lead to a collection of plots with a categorical representation of species and chromosomes.ElsevierREPOSITÓRIO P.PORTOCosta, António CardosoMachado, J. A. TenreiroQuelhas, Dulce2013-04-19T15:53:23Z20122012-01-01T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://hdl.handle.net/10400.22/1438eng0378-111910.1016/j.gene.2011.09.015info:eu-repo/semantics/openAccessreponame:Repositórios Científicos de Acesso Aberto de Portugal (RCAAP)instname:FCCN, serviços digitais da FCT – Fundação para a Ciência e a Tecnologiainstacron:RCAAP2025-04-02T03:26:07Zoai:recipp.ipp.pt:10400.22/1438Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireinfo@rcaap.ptopendoar:https://opendoar.ac.uk/repository/71602025-05-29T00:55:55.359782Repositórios Científicos de Acesso Aberto de Portugal (RCAAP) - FCCN, serviços digitais da FCT – Fundação para a Ciência e a Tecnologiafalse
dc.title.none.fl_str_mv Analysis and visualization of chromosome information
title Analysis and visualization of chromosome information
spellingShingle Analysis and visualization of chromosome information
Costa, António Cardoso
DNA
Chromosome
Phylogenetics
MDS
Correlation
Visualization
title_short Analysis and visualization of chromosome information
title_full Analysis and visualization of chromosome information
title_fullStr Analysis and visualization of chromosome information
title_full_unstemmed Analysis and visualization of chromosome information
title_sort Analysis and visualization of chromosome information
author Costa, António Cardoso
author_facet Costa, António Cardoso
Machado, J. A. Tenreiro
Quelhas, Dulce
author_role author
author2 Machado, J. A. Tenreiro
Quelhas, Dulce
author2_role author
author
dc.contributor.none.fl_str_mv REPOSITÓRIO P.PORTO
dc.contributor.author.fl_str_mv Costa, António Cardoso
Machado, J. A. Tenreiro
Quelhas, Dulce
dc.subject.por.fl_str_mv DNA
Chromosome
Phylogenetics
MDS
Correlation
Visualization
topic DNA
Chromosome
Phylogenetics
MDS
Correlation
Visualization
description This paper analyzes the DNA code of several species in the perspective of information content. For that purpose several concepts and mathematical tools are selected towards establishing a quantitative method without a priori distorting the alphabet represented by the sequence of DNA bases. The synergies of associating Gray code, histogram characterization and multidimensional scaling visualization lead to a collection of plots with a categorical representation of species and chromosomes.
publishDate 2012
dc.date.none.fl_str_mv 2012
2012-01-01T00:00:00Z
2013-04-19T15:53:23Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://hdl.handle.net/10400.22/1438
url http://hdl.handle.net/10400.22/1438
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv 0378-1119
10.1016/j.gene.2011.09.015
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Elsevier
publisher.none.fl_str_mv Elsevier
dc.source.none.fl_str_mv reponame:Repositórios Científicos de Acesso Aberto de Portugal (RCAAP)
instname:FCCN, serviços digitais da FCT – Fundação para a Ciência e a Tecnologia
instacron:RCAAP
instname_str FCCN, serviços digitais da FCT – Fundação para a Ciência e a Tecnologia
instacron_str RCAAP
institution RCAAP
reponame_str Repositórios Científicos de Acesso Aberto de Portugal (RCAAP)
collection Repositórios Científicos de Acesso Aberto de Portugal (RCAAP)
repository.name.fl_str_mv Repositórios Científicos de Acesso Aberto de Portugal (RCAAP) - FCCN, serviços digitais da FCT – Fundação para a Ciência e a Tecnologia
repository.mail.fl_str_mv info@rcaap.pt
_version_ 1833600761435521024

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