Automated Discovery of Relationships, Models, and Principles in Ecology

Detalhes bibliográficos
Autor(a) principal: Cardoso, Pedro
Data de Publicação: 2020
Outros Autores: Veiga Branco, Vasco, Borges, Paulo A.V., Carvalho, José Carlos, Rigal, François, Gabriel, Rosalina, Mammola, Stefano, Cascalho, José Manuel, Correia, Luís
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositórios Científicos de Acesso Aberto de Portugal (RCAAP)
Texto Completo: http://hdl.handle.net/10400.3/5778
Resumo: Ecological systems are the quintessential complex systems, involving numerous high-order interactions and non-linear relationships. The most used statistical modeling techniques can hardly accommodate the complexity of ecological patterns and processes. Finding hidden relationships in complex data is now possible using massive computational power, particularly by means of artificial intelligence and machine learning methods. Here we explored the potential of symbolic regression (SR), commonly used in other areas, in the field of ecology. Symbolic regression searches for both the formal structure of equations and the fitting parameters simultaneously, hence providing the required flexibility to characterize complex ecological systems. Although the method here presented is automated, it is part of a collaborative human–machine effort and we demonstrate ways to do it. First, we test the robustness of SR to extreme levels of noise when searching for the species-area relationship. Second, we demonstrate how SR can model species richness and spatial distributions. Third, we illustrate how SR can be used to find general models in ecology, namely new formulas for species richness estimators and the general dynamic model of oceanic island biogeography. We propose that evolving free-form equations purely from data, often without prior human inference or hypotheses, may represent a very powerful tool for ecologists and biogeographers to become aware of hidden relationships and suggest general theoretical models and principles.
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spelling Automated Discovery of Relationships, Models, and Principles in EcologyArtificial IntelligenceEcological ComplexityEvolutionary ComputationGenetic ProgrammingSpecies Richness EstimationSpecies-area RelationshipSpecies Distribution ModelingSymbolic RegressionEcological systems are the quintessential complex systems, involving numerous high-order interactions and non-linear relationships. The most used statistical modeling techniques can hardly accommodate the complexity of ecological patterns and processes. Finding hidden relationships in complex data is now possible using massive computational power, particularly by means of artificial intelligence and machine learning methods. Here we explored the potential of symbolic regression (SR), commonly used in other areas, in the field of ecology. Symbolic regression searches for both the formal structure of equations and the fitting parameters simultaneously, hence providing the required flexibility to characterize complex ecological systems. Although the method here presented is automated, it is part of a collaborative human–machine effort and we demonstrate ways to do it. First, we test the robustness of SR to extreme levels of noise when searching for the species-area relationship. Second, we demonstrate how SR can model species richness and spatial distributions. Third, we illustrate how SR can be used to find general models in ecology, namely new formulas for species richness estimators and the general dynamic model of oceanic island biogeography. We propose that evolving free-form equations purely from data, often without prior human inference or hypotheses, may represent a very powerful tool for ecologists and biogeographers to become aware of hidden relationships and suggest general theoretical models and principles.Frontiers MediaRepositório da Universidade dos AçoresCardoso, PedroVeiga Branco, VascoBorges, Paulo A.V.Carvalho, José CarlosRigal, FrançoisGabriel, RosalinaMammola, StefanoCascalho, José ManuelCorreia, Luís2021-03-10T18:22:41Z2020-122020-12-01T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://hdl.handle.net/10400.3/5778eng1948-659610.3389/fevo.2020.530135info:eu-repo/semantics/openAccessreponame:Repositórios Científicos de Acesso Aberto de Portugal (RCAAP)instname:FCCN, serviços digitais da FCT – Fundação para a Ciência e a Tecnologiainstacron:RCAAP2025-03-07T10:08:18Zoai:repositorio.uac.pt:10400.3/5778Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireinfo@rcaap.ptopendoar:https://opendoar.ac.uk/repository/71602025-05-29T00:40:11.208522Repositórios Científicos de Acesso Aberto de Portugal (RCAAP) - FCCN, serviços digitais da FCT – Fundação para a Ciência e a Tecnologiafalse
dc.title.none.fl_str_mv Automated Discovery of Relationships, Models, and Principles in Ecology
title Automated Discovery of Relationships, Models, and Principles in Ecology
spellingShingle Automated Discovery of Relationships, Models, and Principles in Ecology
Cardoso, Pedro
Artificial Intelligence
Ecological Complexity
Evolutionary Computation
Genetic Programming
Species Richness Estimation
Species-area Relationship
Species Distribution Modeling
Symbolic Regression
title_short Automated Discovery of Relationships, Models, and Principles in Ecology
title_full Automated Discovery of Relationships, Models, and Principles in Ecology
title_fullStr Automated Discovery of Relationships, Models, and Principles in Ecology
title_full_unstemmed Automated Discovery of Relationships, Models, and Principles in Ecology
title_sort Automated Discovery of Relationships, Models, and Principles in Ecology
author Cardoso, Pedro
author_facet Cardoso, Pedro
Veiga Branco, Vasco
Borges, Paulo A.V.
Carvalho, José Carlos
Rigal, François
Gabriel, Rosalina
Mammola, Stefano
Cascalho, José Manuel
Correia, Luís
author_role author
author2 Veiga Branco, Vasco
Borges, Paulo A.V.
Carvalho, José Carlos
Rigal, François
Gabriel, Rosalina
Mammola, Stefano
Cascalho, José Manuel
Correia, Luís
author2_role author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv Repositório da Universidade dos Açores
dc.contributor.author.fl_str_mv Cardoso, Pedro
Veiga Branco, Vasco
Borges, Paulo A.V.
Carvalho, José Carlos
Rigal, François
Gabriel, Rosalina
Mammola, Stefano
Cascalho, José Manuel
Correia, Luís
dc.subject.por.fl_str_mv Artificial Intelligence
Ecological Complexity
Evolutionary Computation
Genetic Programming
Species Richness Estimation
Species-area Relationship
Species Distribution Modeling
Symbolic Regression
topic Artificial Intelligence
Ecological Complexity
Evolutionary Computation
Genetic Programming
Species Richness Estimation
Species-area Relationship
Species Distribution Modeling
Symbolic Regression
description Ecological systems are the quintessential complex systems, involving numerous high-order interactions and non-linear relationships. The most used statistical modeling techniques can hardly accommodate the complexity of ecological patterns and processes. Finding hidden relationships in complex data is now possible using massive computational power, particularly by means of artificial intelligence and machine learning methods. Here we explored the potential of symbolic regression (SR), commonly used in other areas, in the field of ecology. Symbolic regression searches for both the formal structure of equations and the fitting parameters simultaneously, hence providing the required flexibility to characterize complex ecological systems. Although the method here presented is automated, it is part of a collaborative human–machine effort and we demonstrate ways to do it. First, we test the robustness of SR to extreme levels of noise when searching for the species-area relationship. Second, we demonstrate how SR can model species richness and spatial distributions. Third, we illustrate how SR can be used to find general models in ecology, namely new formulas for species richness estimators and the general dynamic model of oceanic island biogeography. We propose that evolving free-form equations purely from data, often without prior human inference or hypotheses, may represent a very powerful tool for ecologists and biogeographers to become aware of hidden relationships and suggest general theoretical models and principles.
publishDate 2020
dc.date.none.fl_str_mv 2020-12
2020-12-01T00:00:00Z
2021-03-10T18:22:41Z
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dc.language.iso.fl_str_mv eng
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10.3389/fevo.2020.530135
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dc.publisher.none.fl_str_mv Frontiers Media
publisher.none.fl_str_mv Frontiers Media
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