Automated Discovery of Relationships, Models, and Principles in Ecology
| Autor(a) principal: | |
|---|---|
| Data de Publicação: | 2020 |
| Outros Autores: | , , , , , , , |
| Tipo de documento: | Artigo |
| Idioma: | eng |
| Título da fonte: | Repositórios Científicos de Acesso Aberto de Portugal (RCAAP) |
| Texto Completo: | http://hdl.handle.net/10400.3/5778 |
Resumo: | Ecological systems are the quintessential complex systems, involving numerous high-order interactions and non-linear relationships. The most used statistical modeling techniques can hardly accommodate the complexity of ecological patterns and processes. Finding hidden relationships in complex data is now possible using massive computational power, particularly by means of artificial intelligence and machine learning methods. Here we explored the potential of symbolic regression (SR), commonly used in other areas, in the field of ecology. Symbolic regression searches for both the formal structure of equations and the fitting parameters simultaneously, hence providing the required flexibility to characterize complex ecological systems. Although the method here presented is automated, it is part of a collaborative human–machine effort and we demonstrate ways to do it. First, we test the robustness of SR to extreme levels of noise when searching for the species-area relationship. Second, we demonstrate how SR can model species richness and spatial distributions. Third, we illustrate how SR can be used to find general models in ecology, namely new formulas for species richness estimators and the general dynamic model of oceanic island biogeography. We propose that evolving free-form equations purely from data, often without prior human inference or hypotheses, may represent a very powerful tool for ecologists and biogeographers to become aware of hidden relationships and suggest general theoretical models and principles. |
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Automated Discovery of Relationships, Models, and Principles in EcologyArtificial IntelligenceEcological ComplexityEvolutionary ComputationGenetic ProgrammingSpecies Richness EstimationSpecies-area RelationshipSpecies Distribution ModelingSymbolic RegressionEcological systems are the quintessential complex systems, involving numerous high-order interactions and non-linear relationships. The most used statistical modeling techniques can hardly accommodate the complexity of ecological patterns and processes. Finding hidden relationships in complex data is now possible using massive computational power, particularly by means of artificial intelligence and machine learning methods. Here we explored the potential of symbolic regression (SR), commonly used in other areas, in the field of ecology. Symbolic regression searches for both the formal structure of equations and the fitting parameters simultaneously, hence providing the required flexibility to characterize complex ecological systems. Although the method here presented is automated, it is part of a collaborative human–machine effort and we demonstrate ways to do it. First, we test the robustness of SR to extreme levels of noise when searching for the species-area relationship. Second, we demonstrate how SR can model species richness and spatial distributions. Third, we illustrate how SR can be used to find general models in ecology, namely new formulas for species richness estimators and the general dynamic model of oceanic island biogeography. We propose that evolving free-form equations purely from data, often without prior human inference or hypotheses, may represent a very powerful tool for ecologists and biogeographers to become aware of hidden relationships and suggest general theoretical models and principles.Frontiers MediaRepositório da Universidade dos AçoresCardoso, PedroVeiga Branco, VascoBorges, Paulo A.V.Carvalho, José CarlosRigal, FrançoisGabriel, RosalinaMammola, StefanoCascalho, José ManuelCorreia, Luís2021-03-10T18:22:41Z2020-122020-12-01T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://hdl.handle.net/10400.3/5778eng1948-659610.3389/fevo.2020.530135info:eu-repo/semantics/openAccessreponame:Repositórios Científicos de Acesso Aberto de Portugal (RCAAP)instname:FCCN, serviços digitais da FCT – Fundação para a Ciência e a Tecnologiainstacron:RCAAP2025-03-07T10:08:18Zoai:repositorio.uac.pt:10400.3/5778Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireinfo@rcaap.ptopendoar:https://opendoar.ac.uk/repository/71602025-05-29T00:40:11.208522Repositórios Científicos de Acesso Aberto de Portugal (RCAAP) - FCCN, serviços digitais da FCT – Fundação para a Ciência e a Tecnologiafalse |
| dc.title.none.fl_str_mv |
Automated Discovery of Relationships, Models, and Principles in Ecology |
| title |
Automated Discovery of Relationships, Models, and Principles in Ecology |
| spellingShingle |
Automated Discovery of Relationships, Models, and Principles in Ecology Cardoso, Pedro Artificial Intelligence Ecological Complexity Evolutionary Computation Genetic Programming Species Richness Estimation Species-area Relationship Species Distribution Modeling Symbolic Regression |
| title_short |
Automated Discovery of Relationships, Models, and Principles in Ecology |
| title_full |
Automated Discovery of Relationships, Models, and Principles in Ecology |
| title_fullStr |
Automated Discovery of Relationships, Models, and Principles in Ecology |
| title_full_unstemmed |
Automated Discovery of Relationships, Models, and Principles in Ecology |
| title_sort |
Automated Discovery of Relationships, Models, and Principles in Ecology |
| author |
Cardoso, Pedro |
| author_facet |
Cardoso, Pedro Veiga Branco, Vasco Borges, Paulo A.V. Carvalho, José Carlos Rigal, François Gabriel, Rosalina Mammola, Stefano Cascalho, José Manuel Correia, Luís |
| author_role |
author |
| author2 |
Veiga Branco, Vasco Borges, Paulo A.V. Carvalho, José Carlos Rigal, François Gabriel, Rosalina Mammola, Stefano Cascalho, José Manuel Correia, Luís |
| author2_role |
author author author author author author author author |
| dc.contributor.none.fl_str_mv |
Repositório da Universidade dos Açores |
| dc.contributor.author.fl_str_mv |
Cardoso, Pedro Veiga Branco, Vasco Borges, Paulo A.V. Carvalho, José Carlos Rigal, François Gabriel, Rosalina Mammola, Stefano Cascalho, José Manuel Correia, Luís |
| dc.subject.por.fl_str_mv |
Artificial Intelligence Ecological Complexity Evolutionary Computation Genetic Programming Species Richness Estimation Species-area Relationship Species Distribution Modeling Symbolic Regression |
| topic |
Artificial Intelligence Ecological Complexity Evolutionary Computation Genetic Programming Species Richness Estimation Species-area Relationship Species Distribution Modeling Symbolic Regression |
| description |
Ecological systems are the quintessential complex systems, involving numerous high-order interactions and non-linear relationships. The most used statistical modeling techniques can hardly accommodate the complexity of ecological patterns and processes. Finding hidden relationships in complex data is now possible using massive computational power, particularly by means of artificial intelligence and machine learning methods. Here we explored the potential of symbolic regression (SR), commonly used in other areas, in the field of ecology. Symbolic regression searches for both the formal structure of equations and the fitting parameters simultaneously, hence providing the required flexibility to characterize complex ecological systems. Although the method here presented is automated, it is part of a collaborative human–machine effort and we demonstrate ways to do it. First, we test the robustness of SR to extreme levels of noise when searching for the species-area relationship. Second, we demonstrate how SR can model species richness and spatial distributions. Third, we illustrate how SR can be used to find general models in ecology, namely new formulas for species richness estimators and the general dynamic model of oceanic island biogeography. We propose that evolving free-form equations purely from data, often without prior human inference or hypotheses, may represent a very powerful tool for ecologists and biogeographers to become aware of hidden relationships and suggest general theoretical models and principles. |
| publishDate |
2020 |
| dc.date.none.fl_str_mv |
2020-12 2020-12-01T00:00:00Z 2021-03-10T18:22:41Z |
| dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
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info:eu-repo/semantics/article |
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article |
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publishedVersion |
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http://hdl.handle.net/10400.3/5778 |
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http://hdl.handle.net/10400.3/5778 |
| dc.language.iso.fl_str_mv |
eng |
| language |
eng |
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1948-6596 10.3389/fevo.2020.530135 |
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info:eu-repo/semantics/openAccess |
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openAccess |
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application/pdf |
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Frontiers Media |
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Frontiers Media |
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Repositórios Científicos de Acesso Aberto de Portugal (RCAAP) - FCCN, serviços digitais da FCT – Fundação para a Ciência e a Tecnologia |
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