Digital pathology implementation in a private laboratory: The CEDAP experience

Bibliographic Details
Main Author: Ferreira, Inês
Publication Date: 2023
Other Authors: Montenegro, Carlos Sachica, Coelho, Daniel, Pereira, Maria, da Mata, Sara, Carvalho, Sofia, Araújo, Ana Catarina, Abrantes, Carlos, Ruivo, José Mário, Garcia, Helena, Oliveira, Rui Caetano
Format: Article
Language: eng
Source: Repositórios Científicos de Acesso Aberto de Portugal (RCAAP)
Download full: https://hdl.handle.net/10316/114783
https://doi.org/10.1016/j.jpi.2022.100180
Summary: Introduction: The transition to digital pathology has been carried out by several laboratories across the globe, with some cases described in Portugal. In this article,we describe the transition to digital pathology in a high-volume private laboratory, considering the main challenges and opportunities. Material and methods: Our process started in 2020, with laboratory workflow adaptation and we are currently using a high-capacity scanner (Aperio GT450DX) to digitize slides at 20×. The visualization system, Aperio eSlide Manager WebViewer, is integrated into the Laboratory System. The validation process followed the Royal College of Pathologists Guidelines. Results: Regarding validation, the first phase detected an error rate of 6.8%, mostly due to digitization errors. Phase optimization and collaboration with technical services led to improvements in this process. In the second validation phase, most of the slides had the desired quality for evaluation, with only an error rate of 0.6%, corrected with a new scan. The interpathologist correlation had a total agreement rate of 96.87% and 3.13% partial agreement. Conclusion: The implementation and validation of digital pathology was a success, being ready for prime time. The total integration of all laboratory systems and the acquisition of new equipment will maximize their use, especially with the application of artificial intelligence algorithms.
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spelling Digital pathology implementation in a private laboratory: The CEDAP experienceDigital pathologyImplementationValidationIntroduction: The transition to digital pathology has been carried out by several laboratories across the globe, with some cases described in Portugal. In this article,we describe the transition to digital pathology in a high-volume private laboratory, considering the main challenges and opportunities. Material and methods: Our process started in 2020, with laboratory workflow adaptation and we are currently using a high-capacity scanner (Aperio GT450DX) to digitize slides at 20×. The visualization system, Aperio eSlide Manager WebViewer, is integrated into the Laboratory System. The validation process followed the Royal College of Pathologists Guidelines. Results: Regarding validation, the first phase detected an error rate of 6.8%, mostly due to digitization errors. Phase optimization and collaboration with technical services led to improvements in this process. In the second validation phase, most of the slides had the desired quality for evaluation, with only an error rate of 0.6%, corrected with a new scan. The interpathologist correlation had a total agreement rate of 96.87% and 3.13% partial agreement. Conclusion: The implementation and validation of digital pathology was a success, being ready for prime time. The total integration of all laboratory systems and the acquisition of new equipment will maximize their use, especially with the application of artificial intelligence algorithms.Elsevier2023info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlehttps://hdl.handle.net/10316/114783https://hdl.handle.net/10316/114783https://doi.org/10.1016/j.jpi.2022.100180eng2229-5089Ferreira, InêsMontenegro, Carlos SachicaCoelho, DanielPereira, Mariada Mata, SaraCarvalho, SofiaAraújo, Ana CatarinaAbrantes, CarlosRuivo, José MárioGarcia, HelenaOliveira, Rui Caetanoinfo:eu-repo/semantics/openAccessreponame:Repositórios Científicos de Acesso Aberto de Portugal (RCAAP)instname:FCCN, serviços digitais da FCT – Fundação para a Ciência e a Tecnologiainstacron:RCAAP2024-04-10T10:30:12Zoai:estudogeral.uc.pt:10316/114783Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireinfo@rcaap.ptopendoar:https://opendoar.ac.uk/repository/71602025-05-29T06:07:58.976086Repositórios Científicos de Acesso Aberto de Portugal (RCAAP) - FCCN, serviços digitais da FCT – Fundação para a Ciência e a Tecnologiafalse
dc.title.none.fl_str_mv Digital pathology implementation in a private laboratory: The CEDAP experience
title Digital pathology implementation in a private laboratory: The CEDAP experience
spellingShingle Digital pathology implementation in a private laboratory: The CEDAP experience
Ferreira, Inês
Digital pathology
Implementation
Validation
title_short Digital pathology implementation in a private laboratory: The CEDAP experience
title_full Digital pathology implementation in a private laboratory: The CEDAP experience
title_fullStr Digital pathology implementation in a private laboratory: The CEDAP experience
title_full_unstemmed Digital pathology implementation in a private laboratory: The CEDAP experience
title_sort Digital pathology implementation in a private laboratory: The CEDAP experience
author Ferreira, Inês
author_facet Ferreira, Inês
Montenegro, Carlos Sachica
Coelho, Daniel
Pereira, Maria
da Mata, Sara
Carvalho, Sofia
Araújo, Ana Catarina
Abrantes, Carlos
Ruivo, José Mário
Garcia, Helena
Oliveira, Rui Caetano
author_role author
author2 Montenegro, Carlos Sachica
Coelho, Daniel
Pereira, Maria
da Mata, Sara
Carvalho, Sofia
Araújo, Ana Catarina
Abrantes, Carlos
Ruivo, José Mário
Garcia, Helena
Oliveira, Rui Caetano
author2_role author
author
author
author
author
author
author
author
author
author
dc.contributor.author.fl_str_mv Ferreira, Inês
Montenegro, Carlos Sachica
Coelho, Daniel
Pereira, Maria
da Mata, Sara
Carvalho, Sofia
Araújo, Ana Catarina
Abrantes, Carlos
Ruivo, José Mário
Garcia, Helena
Oliveira, Rui Caetano
dc.subject.por.fl_str_mv Digital pathology
Implementation
Validation
topic Digital pathology
Implementation
Validation
description Introduction: The transition to digital pathology has been carried out by several laboratories across the globe, with some cases described in Portugal. In this article,we describe the transition to digital pathology in a high-volume private laboratory, considering the main challenges and opportunities. Material and methods: Our process started in 2020, with laboratory workflow adaptation and we are currently using a high-capacity scanner (Aperio GT450DX) to digitize slides at 20×. The visualization system, Aperio eSlide Manager WebViewer, is integrated into the Laboratory System. The validation process followed the Royal College of Pathologists Guidelines. Results: Regarding validation, the first phase detected an error rate of 6.8%, mostly due to digitization errors. Phase optimization and collaboration with technical services led to improvements in this process. In the second validation phase, most of the slides had the desired quality for evaluation, with only an error rate of 0.6%, corrected with a new scan. The interpathologist correlation had a total agreement rate of 96.87% and 3.13% partial agreement. Conclusion: The implementation and validation of digital pathology was a success, being ready for prime time. The total integration of all laboratory systems and the acquisition of new equipment will maximize their use, especially with the application of artificial intelligence algorithms.
publishDate 2023
dc.date.none.fl_str_mv 2023
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv https://hdl.handle.net/10316/114783
https://hdl.handle.net/10316/114783
https://doi.org/10.1016/j.jpi.2022.100180
url https://hdl.handle.net/10316/114783
https://doi.org/10.1016/j.jpi.2022.100180
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv 2229-5089
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dc.publisher.none.fl_str_mv Elsevier
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instname:FCCN, serviços digitais da FCT – Fundação para a Ciência e a Tecnologia
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reponame_str Repositórios Científicos de Acesso Aberto de Portugal (RCAAP)
collection Repositórios Científicos de Acesso Aberto de Portugal (RCAAP)
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