Computational Modeling of Biopharmaceuticals Purification Systems
| Autor(a) principal: | |
|---|---|
| Data de Publicação: | 2024 |
| Tipo de documento: | Dissertação |
| Idioma: | eng |
| Título da fonte: | Repositórios Científicos de Acesso Aberto de Portugal (RCAAP) |
| Texto Completo: | http://hdl.handle.net/10362/176399 |
Resumo: | Chromatography is widely used in biopharmaceutical purification, particularly for therapeutic antibodies. However, traditional methods, such as using Protein A resin, are costly and present challenges like ligand leakage and antibody denaturation. Additionally, the process requires large amounts of water and generates significant chemical waste, raising environmental concerns. This thesis focuses on the development of affinity ligands to reduce production costs while maintaining efficiency in antibody purification. By leveraging virtual compound libraries, a scaffold was used to generate millions of potential ligands. This approach reduces the number of experimental candidates while ensuring high chemical diversity. The virtual library was screened to identify ligands with strong binding potential to the antibody. The top-performing ligands were further analyzed to gain insights into their molecular interactions. Two ligands showed strong potential for purification. These findings represent a promising advance toward more sustainable and cost-effective antibody purification. |
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Computational Modeling of Biopharmaceuticals Purification SystemsAntibody PurificationChromatographyAffinity LigandsCombinatorial LibraryVirtual ScreeningDomínio/Área Científica::Ciências Naturais::Outras Ciências NaturaisChromatography is widely used in biopharmaceutical purification, particularly for therapeutic antibodies. However, traditional methods, such as using Protein A resin, are costly and present challenges like ligand leakage and antibody denaturation. Additionally, the process requires large amounts of water and generates significant chemical waste, raising environmental concerns. This thesis focuses on the development of affinity ligands to reduce production costs while maintaining efficiency in antibody purification. By leveraging virtual compound libraries, a scaffold was used to generate millions of potential ligands. This approach reduces the number of experimental candidates while ensuring high chemical diversity. The virtual library was screened to identify ligands with strong binding potential to the antibody. The top-performing ligands were further analyzed to gain insights into their molecular interactions. Two ligands showed strong potential for purification. These findings represent a promising advance toward more sustainable and cost-effective antibody purification.A cromatografia é amplamente utilizada na purificação biofarmacêutica, particularmente para anticorpos terapêuticos. No entanto, os métodos tradicionais, como o uso de resina de Proteína A, são dispendiosos e apresentam desafios como o risco de fuga de ligandos e a desnaturação de anticorpos. Além disso, o processo requer grandes quantidades de água e gera resíduos químicos significativos, levantando preocupações ambientais. Esta tese foca-se no desenvolvimento de ligandos de afinidade para reduzir os custos de produção, mantendo a eficiência na purificação de anticorpos. Ao utilizar bibliotecas de compostos virtuais, foi usado um esqueleto para gerar milhões de ligandos potenciais. Esta abordagem reduz o número de candidatos experimentais, garantindo uma alta diversidade química. A biblioteca virtual foi analisada para identificar ligandos com forte potencial de ligação ao anticorpo. Os ligandos de melhor desempenho foram analisados em profundidade para obter informações sobre as suas interações moleculares. Dois ligandos demonstraram forte potencial para purificação. Estes resultados representam um avanço promissor rumo a uma purificação de anticorpos mais sustentável e económica.Barbosa, ArménioRoque, AnaRUNRodrigues, Jéssica Maria Dias2024-11-212027-09-21T00:00:00Z2024-11-21T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/masterThesisapplication/pdfhttp://hdl.handle.net/10362/176399enginfo:eu-repo/semantics/embargoedAccessreponame:Repositórios Científicos de Acesso Aberto de Portugal (RCAAP)instname:FCCN, serviços digitais da FCT – Fundação para a Ciência e a Tecnologiainstacron:RCAAP2024-12-23T01:37:28Zoai:run.unl.pt:10362/176399Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireinfo@rcaap.ptopendoar:https://opendoar.ac.uk/repository/71602025-05-28T19:19:44.573051Repositórios Científicos de Acesso Aberto de Portugal (RCAAP) - FCCN, serviços digitais da FCT – Fundação para a Ciência e a Tecnologiafalse |
| dc.title.none.fl_str_mv |
Computational Modeling of Biopharmaceuticals Purification Systems |
| title |
Computational Modeling of Biopharmaceuticals Purification Systems |
| spellingShingle |
Computational Modeling of Biopharmaceuticals Purification Systems Rodrigues, Jéssica Maria Dias Antibody Purification Chromatography Affinity Ligands Combinatorial Library Virtual Screening Domínio/Área Científica::Ciências Naturais::Outras Ciências Naturais |
| title_short |
Computational Modeling of Biopharmaceuticals Purification Systems |
| title_full |
Computational Modeling of Biopharmaceuticals Purification Systems |
| title_fullStr |
Computational Modeling of Biopharmaceuticals Purification Systems |
| title_full_unstemmed |
Computational Modeling of Biopharmaceuticals Purification Systems |
| title_sort |
Computational Modeling of Biopharmaceuticals Purification Systems |
| author |
Rodrigues, Jéssica Maria Dias |
| author_facet |
Rodrigues, Jéssica Maria Dias |
| author_role |
author |
| dc.contributor.none.fl_str_mv |
Barbosa, Arménio Roque, Ana RUN |
| dc.contributor.author.fl_str_mv |
Rodrigues, Jéssica Maria Dias |
| dc.subject.por.fl_str_mv |
Antibody Purification Chromatography Affinity Ligands Combinatorial Library Virtual Screening Domínio/Área Científica::Ciências Naturais::Outras Ciências Naturais |
| topic |
Antibody Purification Chromatography Affinity Ligands Combinatorial Library Virtual Screening Domínio/Área Científica::Ciências Naturais::Outras Ciências Naturais |
| description |
Chromatography is widely used in biopharmaceutical purification, particularly for therapeutic antibodies. However, traditional methods, such as using Protein A resin, are costly and present challenges like ligand leakage and antibody denaturation. Additionally, the process requires large amounts of water and generates significant chemical waste, raising environmental concerns. This thesis focuses on the development of affinity ligands to reduce production costs while maintaining efficiency in antibody purification. By leveraging virtual compound libraries, a scaffold was used to generate millions of potential ligands. This approach reduces the number of experimental candidates while ensuring high chemical diversity. The virtual library was screened to identify ligands with strong binding potential to the antibody. The top-performing ligands were further analyzed to gain insights into their molecular interactions. Two ligands showed strong potential for purification. These findings represent a promising advance toward more sustainable and cost-effective antibody purification. |
| publishDate |
2024 |
| dc.date.none.fl_str_mv |
2024-11-21 2024-11-21T00:00:00Z 2027-09-21T00:00:00Z |
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info:eu-repo/semantics/publishedVersion |
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info:eu-repo/semantics/masterThesis |
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masterThesis |
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publishedVersion |
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http://hdl.handle.net/10362/176399 |
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http://hdl.handle.net/10362/176399 |
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eng |
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eng |
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info:eu-repo/semantics/embargoedAccess |
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embargoedAccess |
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application/pdf |
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Repositórios Científicos de Acesso Aberto de Portugal (RCAAP) |
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Repositórios Científicos de Acesso Aberto de Portugal (RCAAP) - FCCN, serviços digitais da FCT – Fundação para a Ciência e a Tecnologia |
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