Computational Modeling of Biopharmaceuticals Purification Systems

Detalhes bibliográficos
Autor(a) principal: Rodrigues, Jéssica Maria Dias
Data de Publicação: 2024
Tipo de documento: Dissertação
Idioma: eng
Título da fonte: Repositórios Científicos de Acesso Aberto de Portugal (RCAAP)
Texto Completo: http://hdl.handle.net/10362/176399
Resumo: Chromatography is widely used in biopharmaceutical purification, particularly for therapeutic antibodies. However, traditional methods, such as using Protein A resin, are costly and present challenges like ligand leakage and antibody denaturation. Additionally, the process requires large amounts of water and generates significant chemical waste, raising environmental concerns. This thesis focuses on the development of affinity ligands to reduce production costs while maintaining efficiency in antibody purification. By leveraging virtual compound libraries, a scaffold was used to generate millions of potential ligands. This approach reduces the number of experimental candidates while ensuring high chemical diversity. The virtual library was screened to identify ligands with strong binding potential to the antibody. The top-performing ligands were further analyzed to gain insights into their molecular interactions. Two ligands showed strong potential for purification. These findings represent a promising advance toward more sustainable and cost-effective antibody purification.
id RCAP_117c0c8cf2c00ccd4d019ccb78efc9a3
oai_identifier_str oai:run.unl.pt:10362/176399
network_acronym_str RCAP
network_name_str Repositórios Científicos de Acesso Aberto de Portugal (RCAAP)
repository_id_str https://opendoar.ac.uk/repository/7160
spelling Computational Modeling of Biopharmaceuticals Purification SystemsAntibody PurificationChromatographyAffinity LigandsCombinatorial LibraryVirtual ScreeningDomínio/Área Científica::Ciências Naturais::Outras Ciências NaturaisChromatography is widely used in biopharmaceutical purification, particularly for therapeutic antibodies. However, traditional methods, such as using Protein A resin, are costly and present challenges like ligand leakage and antibody denaturation. Additionally, the process requires large amounts of water and generates significant chemical waste, raising environmental concerns. This thesis focuses on the development of affinity ligands to reduce production costs while maintaining efficiency in antibody purification. By leveraging virtual compound libraries, a scaffold was used to generate millions of potential ligands. This approach reduces the number of experimental candidates while ensuring high chemical diversity. The virtual library was screened to identify ligands with strong binding potential to the antibody. The top-performing ligands were further analyzed to gain insights into their molecular interactions. Two ligands showed strong potential for purification. These findings represent a promising advance toward more sustainable and cost-effective antibody purification.A cromatografia é amplamente utilizada na purificação biofarmacêutica, particularmente para anticorpos terapêuticos. No entanto, os métodos tradicionais, como o uso de resina de Proteína A, são dispendiosos e apresentam desafios como o risco de fuga de ligandos e a desnaturação de anticorpos. Além disso, o processo requer grandes quantidades de água e gera resíduos químicos significativos, levantando preocupações ambientais. Esta tese foca-se no desenvolvimento de ligandos de afinidade para reduzir os custos de produção, mantendo a eficiência na purificação de anticorpos. Ao utilizar bibliotecas de compostos virtuais, foi usado um esqueleto para gerar milhões de ligandos potenciais. Esta abordagem reduz o número de candidatos experimentais, garantindo uma alta diversidade química. A biblioteca virtual foi analisada para identificar ligandos com forte potencial de ligação ao anticorpo. Os ligandos de melhor desempenho foram analisados em profundidade para obter informações sobre as suas interações moleculares. Dois ligandos demonstraram forte potencial para purificação. Estes resultados representam um avanço promissor rumo a uma purificação de anticorpos mais sustentável e económica.Barbosa, ArménioRoque, AnaRUNRodrigues, Jéssica Maria Dias2024-11-212027-09-21T00:00:00Z2024-11-21T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/masterThesisapplication/pdfhttp://hdl.handle.net/10362/176399enginfo:eu-repo/semantics/embargoedAccessreponame:Repositórios Científicos de Acesso Aberto de Portugal (RCAAP)instname:FCCN, serviços digitais da FCT – Fundação para a Ciência e a Tecnologiainstacron:RCAAP2024-12-23T01:37:28Zoai:run.unl.pt:10362/176399Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireinfo@rcaap.ptopendoar:https://opendoar.ac.uk/repository/71602025-05-28T19:19:44.573051Repositórios Científicos de Acesso Aberto de Portugal (RCAAP) - FCCN, serviços digitais da FCT – Fundação para a Ciência e a Tecnologiafalse
dc.title.none.fl_str_mv Computational Modeling of Biopharmaceuticals Purification Systems
title Computational Modeling of Biopharmaceuticals Purification Systems
spellingShingle Computational Modeling of Biopharmaceuticals Purification Systems
Rodrigues, Jéssica Maria Dias
Antibody Purification
Chromatography
Affinity Ligands
Combinatorial Library
Virtual Screening
Domínio/Área Científica::Ciências Naturais::Outras Ciências Naturais
title_short Computational Modeling of Biopharmaceuticals Purification Systems
title_full Computational Modeling of Biopharmaceuticals Purification Systems
title_fullStr Computational Modeling of Biopharmaceuticals Purification Systems
title_full_unstemmed Computational Modeling of Biopharmaceuticals Purification Systems
title_sort Computational Modeling of Biopharmaceuticals Purification Systems
author Rodrigues, Jéssica Maria Dias
author_facet Rodrigues, Jéssica Maria Dias
author_role author
dc.contributor.none.fl_str_mv Barbosa, Arménio
Roque, Ana
RUN
dc.contributor.author.fl_str_mv Rodrigues, Jéssica Maria Dias
dc.subject.por.fl_str_mv Antibody Purification
Chromatography
Affinity Ligands
Combinatorial Library
Virtual Screening
Domínio/Área Científica::Ciências Naturais::Outras Ciências Naturais
topic Antibody Purification
Chromatography
Affinity Ligands
Combinatorial Library
Virtual Screening
Domínio/Área Científica::Ciências Naturais::Outras Ciências Naturais
description Chromatography is widely used in biopharmaceutical purification, particularly for therapeutic antibodies. However, traditional methods, such as using Protein A resin, are costly and present challenges like ligand leakage and antibody denaturation. Additionally, the process requires large amounts of water and generates significant chemical waste, raising environmental concerns. This thesis focuses on the development of affinity ligands to reduce production costs while maintaining efficiency in antibody purification. By leveraging virtual compound libraries, a scaffold was used to generate millions of potential ligands. This approach reduces the number of experimental candidates while ensuring high chemical diversity. The virtual library was screened to identify ligands with strong binding potential to the antibody. The top-performing ligands were further analyzed to gain insights into their molecular interactions. Two ligands showed strong potential for purification. These findings represent a promising advance toward more sustainable and cost-effective antibody purification.
publishDate 2024
dc.date.none.fl_str_mv 2024-11-21
2024-11-21T00:00:00Z
2027-09-21T00:00:00Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/masterThesis
format masterThesis
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://hdl.handle.net/10362/176399
url http://hdl.handle.net/10362/176399
dc.language.iso.fl_str_mv eng
language eng
dc.rights.driver.fl_str_mv info:eu-repo/semantics/embargoedAccess
eu_rights_str_mv embargoedAccess
dc.format.none.fl_str_mv application/pdf
dc.source.none.fl_str_mv reponame:Repositórios Científicos de Acesso Aberto de Portugal (RCAAP)
instname:FCCN, serviços digitais da FCT – Fundação para a Ciência e a Tecnologia
instacron:RCAAP
instname_str FCCN, serviços digitais da FCT – Fundação para a Ciência e a Tecnologia
instacron_str RCAAP
institution RCAAP
reponame_str Repositórios Científicos de Acesso Aberto de Portugal (RCAAP)
collection Repositórios Científicos de Acesso Aberto de Portugal (RCAAP)
repository.name.fl_str_mv Repositórios Científicos de Acesso Aberto de Portugal (RCAAP) - FCCN, serviços digitais da FCT – Fundação para a Ciência e a Tecnologia
repository.mail.fl_str_mv info@rcaap.pt
_version_ 1833598022559203328